Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm20445-201ENSMUST00000061905 565 ntBASIC10.42□□□□□ -0.74
Cdx1P18111 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx1P18111 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC10.42□□□□□ -0.74
Cdx1P18111 Gm9252-201ENSMUST00000172364 1602 ntBASIC10.42□□□□□ -0.74
Cdx1P18111 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx1P18111 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx1P18111 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx1P18111 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC10.42□□□□□ -0.74
Cdx1P18111 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx1P18111 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx1P18111 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC10.42□□□□□ -0.74
Cdx1P18111 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx1P18111 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx1P18111 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx1P18111 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
Cdx1P18111 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx1P18111 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC10.42□□□□□ -0.74
Cdx1P18111 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx1P18111 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx1P18111 Rbm6-207ENSMUST00000183032 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx1P18111 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx1P18111 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx1P18111 Gm44292-201ENSMUST00000205194 2364 ntBASIC10.41□□□□□ -0.74
Cdx1P18111 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Igsf9-202ENSMUST00000111235 4205 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Gm4316-201ENSMUST00000212411 2617 ntTSL 5 BASIC10.41□□□□□ -0.74
Cdx1P18111 Ttc14-201ENSMUST00000099153 9661 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC10.41□□□□□ -0.74
Cdx1P18111 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Ippk-201ENSMUST00000021817 2856 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC10.41□□□□□ -0.74
Cdx1P18111 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Kirrel2-201ENSMUST00000045817 3352 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
Cdx1P18111 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
Cdx1P18111 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Gm4875-201ENSMUST00000118257 786 ntBASIC10.41□□□□□ -0.74
Cdx1P18111 Gm12490-201ENSMUST00000120255 560 ntBASIC10.41□□□□□ -0.74
Cdx1P18111 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC10.41□□□□□ -0.74
Cdx1P18111 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC10.41□□□□□ -0.74
Cdx1P18111 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC10.41□□□□□ -0.74
Cdx1P18111 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC10.41□□□□□ -0.74
Cdx1P18111 Cd63-ps-201ENSMUST00000145417 875 ntBASIC10.41□□□□□ -0.74
Cdx1P18111 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Gm27631-201ENSMUST00000184163 466 ntBASIC10.41□□□□□ -0.74
Cdx1P18111 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC10.41□□□□□ -0.74
Cdx1P18111 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC10.41□□□□□ -0.74
Cdx1P18111 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC10.41□□□□□ -0.74
Cdx1P18111 AL593843.1-201ENSMUST00000195891 145 ntBASIC10.41□□□□□ -0.74
Cdx1P18111 Gm43438-201ENSMUST00000198133 379 ntBASIC10.41□□□□□ -0.74
Cdx1P18111 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Gm7653-201ENSMUST00000214567 508 ntBASIC10.41□□□□□ -0.74
Cdx1P18111 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC10.41□□□□□ -0.74
Cdx1P18111 AC154239.3-201ENSMUST00000226933 674 ntBASIC10.41□□□□□ -0.74
Cdx1P18111 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Hist1h2al-201ENSMUST00000091708 339 ntBASIC10.41□□□□□ -0.74
Cdx1P18111 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC10.41□□□□□ -0.74
Cdx1P18111 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
Cdx1P18111 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC10.41□□□□□ -0.74
Cdx1P18111 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Grhl1-202ENSMUST00000085553 3469 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC10.41□□□□□ -0.74
Cdx1P18111 Gm10548-201ENSMUST00000097631 2629 ntBASIC10.41□□□□□ -0.74
Cdx1P18111 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC10.41□□□□□ -0.74
Cdx1P18111 Gm12992-201ENSMUST00000124738 4493 ntTSL 5 BASIC10.41□□□□□ -0.74
Cdx1P18111 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Spop-201ENSMUST00000107722 3063 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
Cdx1P18111 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx1P18111 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
Cdx1P18111 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC10.4□□□□□ -0.74
Cdx1P18111 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.74
Cdx1P18111 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC10.4□□□□□ -0.74
Cdx1P18111 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.74
Cdx1P18111 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms