Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Msx1P13297 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
Msx1P13297 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Msx1P13297 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC12.32□□□□□ -0.44
Msx1P13297 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC12.32□□□□□ -0.44
Msx1P13297 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC12.32□□□□□ -0.44
Msx1P13297 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
Msx1P13297 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
Msx1P13297 Gm11400-201ENSMUST00000120853 1214 ntBASIC12.32□□□□□ -0.44
Msx1P13297 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC12.32□□□□□ -0.44
Msx1P13297 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Bud31-206ENSMUST00000162308 705 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Csn3-201ENSMUST00000001667 991 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC12.32□□□□□ -0.44
Msx1P13297 Mir7221-201ENSMUST00000184009 72 ntBASIC12.32□□□□□ -0.44
Msx1P13297 Gm27320-201ENSMUST00000184892 109 ntBASIC12.32□□□□□ -0.44
Msx1P13297 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Gm29608-201ENSMUST00000190444 463 ntBASIC12.32□□□□□ -0.44
Msx1P13297 Gm42912-201ENSMUST00000197195 716 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC12.32□□□□□ -0.44
Msx1P13297 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC12.32□□□□□ -0.44
Msx1P13297 Gm44146-201ENSMUST00000203508 816 ntBASIC12.32□□□□□ -0.44
Msx1P13297 Gm18944-201ENSMUST00000207672 643 ntBASIC12.32□□□□□ -0.44
Msx1P13297 Gm45865-201ENSMUST00000211815 945 ntBASIC12.32□□□□□ -0.44
Msx1P13297 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Msx1P13297 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Msx1P13297 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC12.32□□□□□ -0.44
Msx1P13297 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Msx1P13297 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msx1P13297 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC12.31□□□□□ -0.44
Msx1P13297 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
Msx1P13297 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Gm42479-201ENSMUST00000198654 1356 ntBASIC12.31□□□□□ -0.44
Msx1P13297 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC12.31□□□□□ -0.44
Msx1P13297 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Gm13369-201ENSMUST00000119442 987 ntBASIC12.31□□□□□ -0.44
Msx1P13297 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
Msx1P13297 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC12.31□□□□□ -0.44
Msx1P13297 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC12.31□□□□□ -0.44
Msx1P13297 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC12.31□□□□□ -0.44
Msx1P13297 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC12.31□□□□□ -0.44
Msx1P13297 Gm25927-201ENSMUST00000175058 117 ntBASIC12.31□□□□□ -0.44
Msx1P13297 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC12.31□□□□□ -0.44
Msx1P13297 Gm37751-201ENSMUST00000192440 1198 ntBASIC12.31□□□□□ -0.44
Msx1P13297 Gm37259-201ENSMUST00000193903 849 ntBASIC12.31□□□□□ -0.44
Msx1P13297 Gm37922-201ENSMUST00000195596 455 ntBASIC12.31□□□□□ -0.44
Msx1P13297 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC12.31□□□□□ -0.44
Msx1P13297 2700097O09Rik-201ENSMUST00000021406 1105 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Gm19189-201ENSMUST00000221689 754 ntBASIC12.31□□□□□ -0.44
Msx1P13297 AC154848.1-201ENSMUST00000225451 846 ntBASIC12.31□□□□□ -0.44
Msx1P13297 AC154462.2-201ENSMUST00000227519 370 ntBASIC12.31□□□□□ -0.44
Msx1P13297 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Vmn1r4-201ENSMUST00000096612 1034 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Msx1P13297 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC12.31□□□□□ -0.44
Msx1P13297 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
Msx1P13297 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC12.31□□□□□ -0.44
Msx1P13297 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msx1P13297 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 269.9 ms