Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
Col1a1P11087 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC14.85□□□□□ -0.03
Col1a1P11087 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Col1a1P11087 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC14.85□□□□□ -0.03
Col1a1P11087 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Col1a1P11087 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC14.85□□□□□ -0.03
Col1a1P11087 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Col1a1P11087 Gm42769-201ENSMUST00000198576 1659 ntBASIC14.85□□□□□ -0.03
Col1a1P11087 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Gm24934-201ENSMUST00000103764 111 ntBASIC14.85□□□□□ -0.03
Col1a1P11087 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC14.85□□□□□ -0.03
Col1a1P11087 Gm25881-201ENSMUST00000157783 103 ntBASIC14.85□□□□□ -0.03
Col1a1P11087 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Col1a1P11087 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC14.85□□□□□ -0.03
Col1a1P11087 Rln1-201ENSMUST00000044143 745 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Sst-201ENSMUST00000004480 599 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Ginm1-202ENSMUST00000065124 300 ntBASIC14.85□□□□□ -0.03
Col1a1P11087 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC14.85□□□□□ -0.03
Col1a1P11087 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Col1a1P11087 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC14.85□□□□□ -0.03
Col1a1P11087 CT025610.1-201ENSMUST00000224552 1786 ntBASIC14.85□□□□□ -0.03
Col1a1P11087 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col1a1P11087 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col1a1P11087 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col1a1P11087 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col1a1P11087 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col1a1P11087 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col1a1P11087 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col1a1P11087 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC14.84□□□□□ -0.03
Col1a1P11087 Gm15881-201ENSMUST00000148792 942 ntBASIC14.84□□□□□ -0.03
Col1a1P11087 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Col1a1P11087 Gm37912-201ENSMUST00000191895 3076 ntBASIC14.84□□□□□ -0.03
Col1a1P11087 Mir7686-201ENSMUST00000200604 57 ntBASIC14.84□□□□□ -0.03
Col1a1P11087 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC14.84□□□□□ -0.03
Col1a1P11087 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col1a1P11087 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC14.84□□□□□ -0.03
Col1a1P11087 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC14.84□□□□□ -0.03
Col1a1P11087 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col1a1P11087 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col1a1P11087 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Col1a1P11087 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col1a1P11087 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col1a1P11087 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
Col1a1P11087 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Col1a1P11087 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col1a1P11087 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Col1a1P11087 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col1a1P11087 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Col1a1P11087 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
Col1a1P11087 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
Col1a1P11087 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col1a1P11087 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col1a1P11087 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col1a1P11087 Gm44401-201ENSMUST00000204462 2375 ntBASIC14.84□□□□□ -0.03
Col1a1P11087 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col1a1P11087 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col1a1P11087 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col1a1P11087 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC14.83□□□□□ -0.03
Col1a1P11087 Gm23596-201ENSMUST00000104304 132 ntBASIC14.83□□□□□ -0.03
Col1a1P11087 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
Col1a1P11087 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC14.83□□□□□ -0.03
Col1a1P11087 Gm13394-201ENSMUST00000121658 1000 ntBASIC14.83□□□□□ -0.03
Col1a1P11087 Gm23085-201ENSMUST00000157849 293 ntBASIC14.83□□□□□ -0.03
Col1a1P11087 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
Col1a1P11087 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
Col1a1P11087 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col1a1P11087 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.03
Col1a1P11087 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col1a1P11087 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
Col1a1P11087 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col1a1P11087 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col1a1P11087 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col1a1P11087 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms