Protein–RNA interactions for Protein: D3Z4R1

Hfm1, Probable ATP-dependent DNA helicase HFM1, mousemouse

Predictions only

Length 1,434 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hfm1D3Z4R1 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Gm9072-201ENSMUST00000218390 1514 ntBASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Mocs2-205ENSMUST00000165022 962 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Rsph14-206ENSMUST00000166088 1203 ntAPPRIS P4 TSL 5 BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Rsph14-207ENSMUST00000179546 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Gm9022-201ENSMUST00000182482 992 ntBASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Gm34023-201ENSMUST00000195539 217 ntBASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Gm4157-201ENSMUST00000211647 679 ntBASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Rsph14-201ENSMUST00000009214 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Gm9129-201ENSMUST00000218173 1689 ntBASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hfm1D3Z4R1 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 Gm24231-201ENSMUST00000104315 133 ntBASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 Gm22144-201ENSMUST00000157402 102 ntBASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 AC151275.1-201ENSMUST00000224870 585 ntBASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hfm1D3Z4R1 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Gm18893-201ENSMUST00000198416 943 ntBASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 AC171277.1-201ENSMUST00000216902 1441 ntBASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 AC122314.1-201ENSMUST00000223056 2239 ntBASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Retreg1-206ENSMUST00000228306 1430 ntBASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Itpr3os-201ENSMUST00000143605 794 ntTSL 2 BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Gm5852-201ENSMUST00000194119 1021 ntBASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Gm5542-201ENSMUST00000195485 1089 ntBASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Gm7395-201ENSMUST00000216059 1045 ntBASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 CT571245.2-201ENSMUST00000218421 305 ntBASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Gm10288-201ENSMUST00000084614 537 ntBASIC17.72■□□□□ 0.43
Hfm1D3Z4R1 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hfm1D3Z4R1 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hfm1D3Z4R1 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hfm1D3Z4R1 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hfm1D3Z4R1 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hfm1D3Z4R1 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hfm1D3Z4R1 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC17.71■□□□□ 0.43
Hfm1D3Z4R1 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hfm1D3Z4R1 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 66.5 ms