Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Trim3Q9R1R2 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
Trim3Q9R1R2 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC12.15□□□□□ -0.47
Trim3Q9R1R2 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 AC137842.1-201ENSMUST00000227896 2064 ntBASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Gm4984-201ENSMUST00000115987 360 ntBASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Gm14127-201ENSMUST00000117906 678 ntBASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Gm15824-201ENSMUST00000119516 955 ntBASIC12.14□□□□□ -0.47
Trim3Q9R1R2 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim3Q9R1R2 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Gm24196-201ENSMUST00000179161 110 ntBASIC12.13□□□□□ -0.47
Trim3Q9R1R2 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Gm7561-201ENSMUST00000211203 886 ntBASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Gm25857-201ENSMUST00000082788 129 ntBASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Gm15222-202ENSMUST00000228667 1726 ntBASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 60.9 ms