Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Pfdn5-203ENSMUST00000165671 830 ntTSL 2 BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Gm9022-201ENSMUST00000182482 992 ntBASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Gm34379-201ENSMUST00000195036 290 ntBASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Spata46-201ENSMUST00000056991 771 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Olfr372-201ENSMUST00000093434 1016 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Gm18294-201ENSMUST00000176980 1748 ntBASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Tomm5-202ENSMUST00000107808 679 ntTSL 2 BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Gm37981-201ENSMUST00000194280 535 ntBASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Gm38117-201ENSMUST00000194653 939 ntBASIC17.05■□□□□ 0.32
Scn4aQ9ER60 1700017M07Rik-201ENSMUST00000198307 940 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Tnfrsf18-201ENSMUST00000040274 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 CT025610.1-201ENSMUST00000224552 1786 ntBASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Gm43267-201ENSMUST00000199664 1796 ntBASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Pttg1-203ENSMUST00000101340 700 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Pttg1-205ENSMUST00000118368 696 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Gm16459-201ENSMUST00000121443 686 ntBASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Gm829-201ENSMUST00000123741 465 ntTSL 3 BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Gm24943-201ENSMUST00000158329 433 ntBASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Gm20400-201ENSMUST00000173695 665 ntTSL 3 BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Gm26982-201ENSMUST00000182250 1151 ntBASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Nmbr-207ENSMUST00000190751 921 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Cdkn3-201ENSMUST00000067426 917 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scn4aQ9ER60 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Scn4aQ9ER60 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Scn4aQ9ER60 Gm3283-201ENSMUST00000199319 1350 ntBASIC17.04■□□□□ 0.32
Scn4aQ9ER60 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Scn4aQ9ER60 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Scn4aQ9ER60 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Scn4aQ9ER60 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Scn4aQ9ER60 Gm37133-201ENSMUST00000192705 1922 ntBASIC17.04■□□□□ 0.32
Scn4aQ9ER60 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Scn4aQ9ER60 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Scn4aQ9ER60 Gm15207-201ENSMUST00000119259 442 ntBASIC17.04■□□□□ 0.32
Scn4aQ9ER60 Mir133a-1hg-201ENSMUST00000179771 395 ntTSL 3 BASIC17.04■□□□□ 0.32
Scn4aQ9ER60 Gm44506-201ENSMUST00000206278 965 ntBASIC17.04■□□□□ 0.32
Scn4aQ9ER60 Tbc1d21-201ENSMUST00000040217 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Scn4aQ9ER60 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Scn4aQ9ER60 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Scn4aQ9ER60 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Scn4aQ9ER60 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Scn4aQ9ER60 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Scn4aQ9ER60 AC173482.6-201ENSMUST00000225889 1741 ntBASIC17.04■□□□□ 0.32
Scn4aQ9ER60 Gm6641-201ENSMUST00000196100 1315 ntBASIC17.04■□□□□ 0.32
Scn4aQ9ER60 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC17.04■□□□□ 0.32
Scn4aQ9ER60 4930555A03Rik-201ENSMUST00000196052 1556 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Gm11783-201ENSMUST00000119549 885 ntBASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Kdm6bos-201ENSMUST00000129924 840 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Gm29135-201ENSMUST00000188411 612 ntTSL 5 BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Gm45572-201ENSMUST00000211774 750 ntTSL 5 BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Mrps11-201ENSMUST00000032840 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Elob-201ENSMUST00000069579 508 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Gm6564-201ENSMUST00000075377 619 ntBASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Gm18210-201ENSMUST00000209001 1524 ntBASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Gm38344-201ENSMUST00000195306 1353 ntBASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Gm10152-201ENSMUST00000193475 1344 ntBASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Fopnl-202ENSMUST00000120707 1414 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Tia1-211ENSMUST00000130967 1445 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Cast-212ENSMUST00000223309 1529 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms