Protein–RNA interactions for Protein: Q99J95

Cdk9, Cyclin-dependent kinase 9, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk9Q99J95 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdk9Q99J95 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdk9Q99J95 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC12.99□□□□□ -0.33
Cdk9Q99J95 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cdk9Q99J95 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdk9Q99J95 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdk9Q99J95 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC12.99□□□□□ -0.33
Cdk9Q99J95 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cdk9Q99J95 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Gm5320-201ENSMUST00000207163 1519 ntBASIC12.98□□□□□ -0.33
Cdk9Q99J95 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Epm2aip1-201ENSMUST00000060711 7149 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Gm13886-201ENSMUST00000117876 1183 ntBASIC12.98□□□□□ -0.33
Cdk9Q99J95 Gm19931-201ENSMUST00000198920 368 ntBASIC12.98□□□□□ -0.33
Cdk9Q99J95 Gm18905-201ENSMUST00000205454 928 ntBASIC12.98□□□□□ -0.33
Cdk9Q99J95 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC12.98□□□□□ -0.33
Cdk9Q99J95 Gm37015-201ENSMUST00000192763 1521 ntBASIC12.98□□□□□ -0.33
Cdk9Q99J95 AC161252.3-201ENSMUST00000225465 1549 ntBASIC12.98□□□□□ -0.33
Cdk9Q99J95 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdk9Q99J95 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
Cdk9Q99J95 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Gm18983-201ENSMUST00000222884 2729 ntBASIC12.97□□□□□ -0.33
Cdk9Q99J95 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cdk9Q99J95 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdk9Q99J95 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Cdk9Q99J95 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdk9Q99J95 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdk9Q99J95 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdk9Q99J95 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdk9Q99J95 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdk9Q99J95 Gm45011-201ENSMUST00000207620 2297 ntBASIC12.96□□□□□ -0.33
Cdk9Q99J95 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdk9Q99J95 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdk9Q99J95 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdk9Q99J95 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC12.96□□□□□ -0.33
Cdk9Q99J95 Gm14685-202ENSMUST00000179117 2773 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms