Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Vps53Q8CCB4 Gm5385-201ENSMUST00000118988 1559 ntBASIC15.01□□□□□ -0.01
Vps53Q8CCB4 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Vps53Q8CCB4 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps53Q8CCB4 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC15.01□□□□□ -0.01
Vps53Q8CCB4 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Vps53Q8CCB4 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Vps53Q8CCB4 Gm5466-201ENSMUST00000119395 1890 ntBASIC15.01□□□□□ -0.01
Vps53Q8CCB4 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Vps53Q8CCB4 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps53Q8CCB4 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps53Q8CCB4 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps53Q8CCB4 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps53Q8CCB4 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps53Q8CCB4 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Vps53Q8CCB4 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Duox1-201ENSMUST00000099461 5267 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
Vps53Q8CCB4 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
Vps53Q8CCB4 Gm7002-201ENSMUST00000221386 2165 ntBASIC15□□□□□ -0.01
Vps53Q8CCB4 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC15□□□□□ -0.01
Vps53Q8CCB4 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC15□□□□□ -0.01
Vps53Q8CCB4 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC15□□□□□ -0.01
Vps53Q8CCB4 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC15□□□□□ -0.01
Vps53Q8CCB4 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Vps53Q8CCB4 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC15□□□□□ -0.01
Vps53Q8CCB4 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Gm43822-201ENSMUST00000200285 476 ntBASIC15□□□□□ -0.01
Vps53Q8CCB4 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Ssr1-203ENSMUST00000225246 1825 ntBASIC15□□□□□ -0.01
Vps53Q8CCB4 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC15□□□□□ -0.01
Vps53Q8CCB4 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC15□□□□□ -0.01
Vps53Q8CCB4 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
Vps53Q8CCB4 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
Vps53Q8CCB4 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
Vps53Q8CCB4 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC15□□□□□ -0.01
Vps53Q8CCB4 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Vps53Q8CCB4 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC15□□□□□ -0.01
Vps53Q8CCB4 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Gm12203-201ENSMUST00000118235 598 ntBASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Gm12209-201ENSMUST00000120089 596 ntBASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Gm4271-201ENSMUST00000174444 973 ntBASIC14.99□□□□□ -0.01
Vps53Q8CCB4 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Gm4959-201ENSMUST00000197271 1044 ntBASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC14.99□□□□□ -0.01
Vps53Q8CCB4 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms