Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim47Q8C0E3 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim47Q8C0E3 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim47Q8C0E3 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim47Q8C0E3 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim47Q8C0E3 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Gm13786-201ENSMUST00000122371 333 ntBASIC14.28□□□□□ -0.12
Trim47Q8C0E3 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Gm24548-201ENSMUST00000158650 108 ntBASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Gm23363-201ENSMUST00000175024 79 ntBASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Gm6546-201ENSMUST00000192096 766 ntBASIC14.28□□□□□ -0.12
Trim47Q8C0E3 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim47Q8C0E3 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Trim47Q8C0E3 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
Trim47Q8C0E3 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Trim47Q8C0E3 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Trim47Q8C0E3 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Trim47Q8C0E3 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Trim47Q8C0E3 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim47Q8C0E3 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim47Q8C0E3 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Trim47Q8C0E3 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Trim47Q8C0E3 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Trim47Q8C0E3 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim47Q8C0E3 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC14.27□□□□□ -0.12
Trim47Q8C0E3 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim47Q8C0E3 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim47Q8C0E3 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim47Q8C0E3 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Trim47Q8C0E3 Gm6023-201ENSMUST00000118217 606 ntBASIC14.27□□□□□ -0.13
Trim47Q8C0E3 Klra4-201ENSMUST00000119096 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim47Q8C0E3 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim47Q8C0E3 Gm13316-201ENSMUST00000140537 691 ntBASIC14.27□□□□□ -0.13
Trim47Q8C0E3 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim47Q8C0E3 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC14.27□□□□□ -0.13
Trim47Q8C0E3 Vmn1r-ps10-201ENSMUST00000176165 889 ntBASIC14.27□□□□□ -0.13
Trim47Q8C0E3 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC14.27□□□□□ -0.13
Trim47Q8C0E3 Gm37592-201ENSMUST00000192741 373 ntTSL 5 BASIC14.27□□□□□ -0.13
Trim47Q8C0E3 Gm18916-201ENSMUST00000198264 1246 ntBASIC14.27□□□□□ -0.13
Trim47Q8C0E3 Gm18935-201ENSMUST00000212692 664 ntBASIC14.27□□□□□ -0.13
Trim47Q8C0E3 Gm5781-201ENSMUST00000219792 443 ntBASIC14.27□□□□□ -0.13
Trim47Q8C0E3 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Trim47Q8C0E3 Olfr582-201ENSMUST00000098212 960 ntBASIC14.27□□□□□ -0.13
Trim47Q8C0E3 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim47Q8C0E3 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim47Q8C0E3 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim47Q8C0E3 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim47Q8C0E3 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim47Q8C0E3 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim47Q8C0E3 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim47Q8C0E3 Gm8617-201ENSMUST00000118796 2222 ntBASIC14.26□□□□□ -0.13
Trim47Q8C0E3 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim47Q8C0E3 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC14.26□□□□□ -0.13
Trim47Q8C0E3 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim47Q8C0E3 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim47Q8C0E3 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim47Q8C0E3 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim47Q8C0E3 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Trim47Q8C0E3 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim47Q8C0E3 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim47Q8C0E3 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim47Q8C0E3 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC14.26□□□□□ -0.13
Trim47Q8C0E3 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Trim47Q8C0E3 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC14.26□□□□□ -0.13
Trim47Q8C0E3 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC14.26□□□□□ -0.13
Trim47Q8C0E3 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim47Q8C0E3 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 63.8 ms