Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3aQ3ULJ3 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC13.53□□□□□ -0.24
Upf3aQ3ULJ3 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3aQ3ULJ3 Crry-ps-201ENSMUST00000079090 1309 ntBASIC13.53□□□□□ -0.24
Upf3aQ3ULJ3 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Upf3aQ3ULJ3 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3aQ3ULJ3 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3aQ3ULJ3 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Upf3aQ3ULJ3 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3aQ3ULJ3 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3aQ3ULJ3 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC13.53□□□□□ -0.24
Upf3aQ3ULJ3 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC13.53□□□□□ -0.24
Upf3aQ3ULJ3 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3aQ3ULJ3 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3aQ3ULJ3 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Upf3aQ3ULJ3 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3aQ3ULJ3 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3aQ3ULJ3 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Upf3aQ3ULJ3 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Upf3aQ3ULJ3 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
Upf3aQ3ULJ3 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Upf3aQ3ULJ3 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Upf3aQ3ULJ3 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Upf3aQ3ULJ3 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Upf3aQ3ULJ3 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
Upf3aQ3ULJ3 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Upf3aQ3ULJ3 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Gm13996-201ENSMUST00000118456 430 ntBASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Gm12176-201ENSMUST00000121420 875 ntBASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Gm12566-201ENSMUST00000121479 359 ntBASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Gm25732-201ENSMUST00000175168 60 ntBASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 AC154222.2-201ENSMUST00000225848 607 ntBASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Gm43908-201ENSMUST00000205074 1472 ntBASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
Upf3aQ3ULJ3 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Gm5989-201ENSMUST00000096092 2077 ntBASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Hemk1-202ENSMUST00000118051 453 ntTSL 3 BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Gm22902-201ENSMUST00000158488 302 ntBASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Gm44651-201ENSMUST00000207343 372 ntBASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms