Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col17a1Q07563 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Col17a1Q07563 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col17a1Q07563 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col17a1Q07563 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC19.3■□□□□ 0.68
Col17a1Q07563 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col17a1Q07563 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col17a1Q07563 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col17a1Q07563 Gm15498-201ENSMUST00000126693 723 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col17a1Q07563 Gm12000-201ENSMUST00000132007 629 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col17a1Q07563 Gm8342-201ENSMUST00000209839 757 ntBASIC19.3■□□□□ 0.68
Col17a1Q07563 Pigx-212ENSMUST00000215073 765 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col17a1Q07563 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC19.3■□□□□ 0.68
Col17a1Q07563 AC122346.3-201ENSMUST00000223983 306 ntBASIC19.3■□□□□ 0.68
Col17a1Q07563 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col17a1Q07563 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col17a1Q07563 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC19.3■□□□□ 0.68
Col17a1Q07563 Defa3-201ENSMUST00000098893 410 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col17a1Q07563 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col17a1Q07563 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col17a1Q07563 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col17a1Q07563 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col17a1Q07563 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col17a1Q07563 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col17a1Q07563 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col17a1Q07563 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col17a1Q07563 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col17a1Q07563 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Col17a1Q07563 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
Col17a1Q07563 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col17a1Q07563 Grk3-204ENSMUST00000197888 1938 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col17a1Q07563 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col17a1Q07563 Gm14270-201ENSMUST00000118388 846 ntBASIC19.29■□□□□ 0.68
Col17a1Q07563 Gm5863-201ENSMUST00000121760 1008 ntBASIC19.29■□□□□ 0.68
Col17a1Q07563 Gm13267-202ENSMUST00000150099 281 ntTSL 2 BASIC19.29■□□□□ 0.68
Col17a1Q07563 Gm28833-201ENSMUST00000189671 559 ntBASIC19.29■□□□□ 0.68
Col17a1Q07563 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Col17a1Q07563 Gm6423-201ENSMUST00000204315 934 ntBASIC19.29■□□□□ 0.68
Col17a1Q07563 Mrpl23-207ENSMUST00000210803 590 ntTSL 3 BASIC19.29■□□□□ 0.68
Col17a1Q07563 Prss3-201ENSMUST00000096003 822 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col17a1Q07563 Tmem208-202ENSMUST00000098453 950 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col17a1Q07563 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col17a1Q07563 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col17a1Q07563 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col17a1Q07563 Platr19-201ENSMUST00000171380 1466 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col17a1Q07563 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col17a1Q07563 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col17a1Q07563 CT009489.1-201ENSMUST00000227740 1893 ntBASIC19.29■□□□□ 0.68
Col17a1Q07563 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col17a1Q07563 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col17a1Q07563 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col17a1Q07563 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col17a1Q07563 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC19.29■□□□□ 0.68
Col17a1Q07563 Unc119-202ENSMUST00000100755 933 ntTSL 2 BASIC19.28■□□□□ 0.68
Col17a1Q07563 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col17a1Q07563 Zdhhc21-202ENSMUST00000107239 1148 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col17a1Q07563 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC19.28■□□□□ 0.68
Col17a1Q07563 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC19.28■□□□□ 0.68
Col17a1Q07563 Gm7192-201ENSMUST00000210793 1137 ntBASIC19.28■□□□□ 0.68
Col17a1Q07563 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC19.28■□□□□ 0.68
Col17a1Q07563 Mustn1-201ENSMUST00000040715 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col17a1Q07563 Tsga10ip-201ENSMUST00000044527 487 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col17a1Q07563 Fam212a-201ENSMUST00000048568 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col17a1Q07563 Krtap4-13-201ENSMUST00000050106 815 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Col17a1Q07563 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC19.28■□□□□ 0.68
Col17a1Q07563 Gm5451-201ENSMUST00000080545 579 ntBASIC19.28■□□□□ 0.68
Col17a1Q07563 Gm7735-201ENSMUST00000089098 159 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Col17a1Q07563 AU016765-201ENSMUST00000097295 946 ntTSL 2 BASIC19.28■□□□□ 0.68
Col17a1Q07563 Gm10580-201ENSMUST00000097985 396 ntBASIC19.28■□□□□ 0.68
Col17a1Q07563 Gm10581-201ENSMUST00000097986 231 ntBASIC19.28■□□□□ 0.68
Col17a1Q07563 Gm10582-201ENSMUST00000097987 396 ntBASIC19.28■□□□□ 0.68
Col17a1Q07563 Gm10583-201ENSMUST00000097988 396 ntBASIC19.28■□□□□ 0.68
Col17a1Q07563 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col17a1Q07563 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Col17a1Q07563 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC19.28■□□□□ 0.68
Col17a1Q07563 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col17a1Q07563 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Col17a1Q07563 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col17a1Q07563 9430015G10Rik-202ENSMUST00000105576 1329 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col17a1Q07563 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col17a1Q07563 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Col17a1Q07563 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col17a1Q07563 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Col17a1Q07563 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col17a1Q07563 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col17a1Q07563 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Col17a1Q07563 Gm45504-201ENSMUST00000211407 2107 ntBASIC19.28■□□□□ 0.68
Col17a1Q07563 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC19.28■□□□□ 0.68
Col17a1Q07563 AC159810.1-201ENSMUST00000214838 1480 ntBASIC19.28■□□□□ 0.68
Col17a1Q07563 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col17a1Q07563 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col17a1Q07563 Tipin-205ENSMUST00000216594 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col17a1Q07563 Oprl1-204ENSMUST00000108767 1248 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col17a1Q07563 Blvra-202ENSMUST00000110389 657 ntTSL 3 BASIC19.28■□□□□ 0.68
Col17a1Q07563 C1qtnf7-202ENSMUST00000121872 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col17a1Q07563 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Col17a1Q07563 Gm24809-201ENSMUST00000175318 271 ntBASIC19.28■□□□□ 0.68
Col17a1Q07563 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC19.28■□□□□ 0.68
Col17a1Q07563 Gm12407-201ENSMUST00000180219 324 ntBASIC19.28■□□□□ 0.68
Col17a1Q07563 Gm5714-201ENSMUST00000197343 566 ntBASIC19.28■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 49.9 ms