Protein–RNA interactions for Protein: Q9DCB1

Hmgn3, High mobility group nucleosome-binding domain-containing protein 3, mousemouse

Predictions only

Length 99 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgn3Q9DCB1 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgn3Q9DCB1 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgn3Q9DCB1 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Fen1-202ENSMUST00000116542 2100 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Zscan29-201ENSMUST00000079024 2465 ntTSL 5 BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Gm12428-201ENSMUST00000119844 727 ntBASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Gm11594-201ENSMUST00000122313 162 ntBASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Gm10766-202ENSMUST00000194123 606 ntBASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Gm44335-201ENSMUST00000196879 141 ntBASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Gm44297-201ENSMUST00000198304 141 ntBASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Gm44346-201ENSMUST00000198851 141 ntBASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Gm8227-201ENSMUST00000223306 571 ntBASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Gm45053-201ENSMUST00000206112 2499 ntBASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgn3Q9DCB1 Gm37513-201ENSMUST00000194830 2268 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm38378-201ENSMUST00000195153 2268 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 AC156031.2-201ENSMUST00000213107 3310 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm22065-201ENSMUST00000103753 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm22066-201ENSMUST00000103761 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm24932-201ENSMUST00000103763 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm24115-201ENSMUST00000103799 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm22190-201ENSMUST00000103827 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm22191-201ENSMUST00000103831 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm24721-201ENSMUST00000103849 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm28018-201ENSMUST00000103869 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm26399-201ENSMUST00000103937 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm5638-201ENSMUST00000118618 1258 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm12537-201ENSMUST00000119266 1002 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm12070-201ENSMUST00000119551 1002 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm12671-201ENSMUST00000119978 1002 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm13292-201ENSMUST00000120014 1000 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm12403-201ENSMUST00000121384 959 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm25349-201ENSMUST00000177728 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm23616-201ENSMUST00000177797 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm25871-201ENSMUST00000177816 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm24752-201ENSMUST00000178240 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm24496-201ENSMUST00000178287 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm25649-201ENSMUST00000178476 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm25548-201ENSMUST00000178681 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm23147-201ENSMUST00000178841 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm26095-201ENSMUST00000179270 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm22171-201ENSMUST00000179283 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm23936-201ENSMUST00000179354 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm22619-201ENSMUST00000179516 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm25255-201ENSMUST00000179579 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm24755-201ENSMUST00000179691 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm26506-201ENSMUST00000179692 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm25086-201ENSMUST00000179931 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm23243-201ENSMUST00000180047 110 ntBASIC12.09□□□□□ -0.47
Hmgn3Q9DCB1 Gm10359-201ENSMUST00000180167 1002 ntBASIC12.09□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms