Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC13.24□□□□□ -0.29
Vps28Q9D1C8 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Gm15459-201ENSMUST00000117405 1941 ntBASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Gm8355-201ENSMUST00000177767 1941 ntBASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Gm37324-201ENSMUST00000194500 4504 ntBASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Gm5187-201ENSMUST00000117317 991 ntBASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Gm13392-201ENSMUST00000117708 150 ntBASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Gm27572-201ENSMUST00000183702 255 ntBASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Gm8706-201ENSMUST00000197372 1491 ntBASIC13.23□□□□□ -0.29
Vps28Q9D1C8 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Gm25927-201ENSMUST00000175058 117 ntBASIC13.22□□□□□ -0.29
Vps28Q9D1C8 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Gm5385-201ENSMUST00000118988 1559 ntBASIC13.22□□□□□ -0.29
Vps28Q9D1C8 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Gm15897-201ENSMUST00000117770 1486 ntBASIC13.22□□□□□ -0.29
Vps28Q9D1C8 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Gm23931-201ENSMUST00000103842 109 ntBASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Mir1938-201ENSMUST00000158746 100 ntBASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Gm17208-201ENSMUST00000168388 535 ntBASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Gm37042-201ENSMUST00000193816 581 ntBASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Gm4768-201ENSMUST00000206199 686 ntBASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Gm10176-201ENSMUST00000159707 2264 ntBASIC13.21□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms