Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Gm7553-201ENSMUST00000185805 1426 ntBASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Gm9124-201ENSMUST00000191789 1092 ntBASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Gm9113-201ENSMUST00000192510 1018 ntBASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Gm9131-201ENSMUST00000193557 1089 ntBASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Gm9121-201ENSMUST00000193749 1071 ntBASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Gm42550-201ENSMUST00000201553 960 ntBASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Zkscan14-203ENSMUST00000198959 2243 ntBASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Mir698-201ENSMUST00000102164 109 ntBASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Gm22331-201ENSMUST00000158066 136 ntBASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Gm43179-201ENSMUST00000198797 275 ntBASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Smc1aQ9CU62 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 AC168058.1-201ENSMUST00000219521 2282 ntBASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Dctn4-202ENSMUST00000223590 1530 ntBASIC14.43□□□□□ -0.1
Smc1aQ9CU62 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC14.43□□□□□ -0.1
Smc1aQ9CU62 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Gm2639-201ENSMUST00000156881 1297 ntBASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Gm18222-201ENSMUST00000202416 1387 ntBASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Smc1aQ9CU62 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms