Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Use1Q9CQ56 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Use1Q9CQ56 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Use1Q9CQ56 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Use1Q9CQ56 Gm40377-201ENSMUST00000204604 2015 ntBASIC12.21□□□□□ -0.46
Use1Q9CQ56 Mtmr10-201ENSMUST00000032736 5205 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Use1Q9CQ56 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
Use1Q9CQ56 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Use1Q9CQ56 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Use1Q9CQ56 Gm3052-202ENSMUST00000188254 2224 ntBASIC12.21□□□□□ -0.46
Use1Q9CQ56 Ldb3-207ENSMUST00000227819 1499 ntBASIC12.21□□□□□ -0.46
Use1Q9CQ56 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Abhd6-203ENSMUST00000225234 1958 ntBASIC12.2□□□□□ -0.46
Use1Q9CQ56 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Use1Q9CQ56 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC12.2□□□□□ -0.46
Use1Q9CQ56 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Nudt18-202ENSMUST00000228554 3619 ntBASIC12.2□□□□□ -0.46
Use1Q9CQ56 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Use1Q9CQ56 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Rnf17-202ENSMUST00000223627 2077 ntBASIC12.19□□□□□ -0.46
Use1Q9CQ56 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Ldha-ps-201ENSMUST00000119390 995 ntBASIC12.19□□□□□ -0.46
Use1Q9CQ56 Gm14057-201ENSMUST00000120631 482 ntBASIC12.19□□□□□ -0.46
Use1Q9CQ56 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC12.19□□□□□ -0.46
Use1Q9CQ56 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Wdyhv1-203ENSMUST00000226889 394 ntBASIC12.19□□□□□ -0.46
Use1Q9CQ56 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Crybg3-201ENSMUST00000044604 5231 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Use1Q9CQ56 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Use1Q9CQ56 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Gm15222-202ENSMUST00000228667 1726 ntBASIC12.18□□□□□ -0.46
Use1Q9CQ56 Pck2-205ENSMUST00000226352 2784 ntBASIC12.18□□□□□ -0.46
Use1Q9CQ56 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Gm13689-201ENSMUST00000119360 685 ntBASIC12.18□□□□□ -0.46
Use1Q9CQ56 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC12.18□□□□□ -0.46
Use1Q9CQ56 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC12.18□□□□□ -0.46
Use1Q9CQ56 Gm18307-201ENSMUST00000206864 949 ntBASIC12.18□□□□□ -0.46
Use1Q9CQ56 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms