Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Trim56Q80VI1 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Gm6023-201ENSMUST00000118217 606 ntBASIC15.19■□□□□ 0.02
Trim56Q80VI1 Mir1938-201ENSMUST00000158746 100 ntBASIC15.19■□□□□ 0.02
Trim56Q80VI1 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Gm27501-201ENSMUST00000183599 107 ntBASIC15.19■□□□□ 0.02
Trim56Q80VI1 Gm6013-201ENSMUST00000212264 699 ntBASIC15.19■□□□□ 0.02
Trim56Q80VI1 Gm5781-201ENSMUST00000219792 443 ntBASIC15.19■□□□□ 0.02
Trim56Q80VI1 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Gm45643-201ENSMUST00000211364 1484 ntBASIC15.19■□□□□ 0.02
Trim56Q80VI1 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Gm11661-201ENSMUST00000121761 1327 ntBASIC15.18■□□□□ 0.02
Trim56Q80VI1 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Gm37827-201ENSMUST00000194486 1542 ntBASIC15.18■□□□□ 0.02
Trim56Q80VI1 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Gm37844-201ENSMUST00000192473 4097 ntBASIC15.18■□□□□ 0.02
Trim56Q80VI1 Daam2-202ENSMUST00000224595 1926 ntBASIC15.18■□□□□ 0.02
Trim56Q80VI1 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Gm38042-201ENSMUST00000191614 5208 ntBASIC15.18■□□□□ 0.02
Trim56Q80VI1 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Gm14921-201ENSMUST00000118643 908 ntBASIC15.18■□□□□ 0.02
Trim56Q80VI1 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC15.18■□□□□ 0.02
Trim56Q80VI1 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Gm6652-201ENSMUST00000186414 1070 ntBASIC15.18■□□□□ 0.02
Trim56Q80VI1 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Gm42853-201ENSMUST00000201273 1387 ntBASIC15.18■□□□□ 0.02
Trim56Q80VI1 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trim56Q80VI1 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 AC241621.2-201ENSMUST00000223991 2151 ntBASIC15.17■□□□□ 0.02
Trim56Q80VI1 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Gm13786-201ENSMUST00000122371 333 ntBASIC15.17■□□□□ 0.02
Trim56Q80VI1 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Gm27516-201ENSMUST00000184237 98 ntBASIC15.17■□□□□ 0.02
Trim56Q80VI1 Olfr284-202ENSMUST00000206647 966 ntBASIC15.17■□□□□ 0.02
Trim56Q80VI1 Gm45331-201ENSMUST00000209868 554 ntBASIC15.17■□□□□ 0.02
Trim56Q80VI1 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trim56Q80VI1 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 107.2 ms