Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp39Q3TIX9 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC12.53□□□□□ -0.4
Usp39Q3TIX9 Gm28323-201ENSMUST00000186817 2499 ntBASIC12.53□□□□□ -0.4
Usp39Q3TIX9 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Usp39Q3TIX9 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
Usp39Q3TIX9 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC12.53□□□□□ -0.4
Usp39Q3TIX9 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp39Q3TIX9 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usp39Q3TIX9 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Usp39Q3TIX9 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp39Q3TIX9 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Usp39Q3TIX9 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usp39Q3TIX9 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Usp39Q3TIX9 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usp39Q3TIX9 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Usp39Q3TIX9 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
Usp39Q3TIX9 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
Usp39Q3TIX9 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp39Q3TIX9 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp39Q3TIX9 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp39Q3TIX9 Gm38385-201ENSMUST00000194454 2351 ntBASIC12.52□□□□□ -0.4
Usp39Q3TIX9 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp39Q3TIX9 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp39Q3TIX9 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp39Q3TIX9 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp39Q3TIX9 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Gm11425-201ENSMUST00000119608 498 ntBASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Gm18307-201ENSMUST00000206864 949 ntBASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Gm17794-201ENSMUST00000220252 955 ntBASIC12.52□□□□□ -0.41
Usp39Q3TIX9 AC238811.3-201ENSMUST00000225422 709 ntBASIC12.52□□□□□ -0.41
Usp39Q3TIX9 AC093022.5-201ENSMUST00000226841 1079 ntBASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Gm9396-201ENSMUST00000076703 567 ntBASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 AC125108.1-201ENSMUST00000218986 2330 ntBASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp39Q3TIX9 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 AC117194.1-201ENSMUST00000224847 3002 ntBASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Gm12742-201ENSMUST00000117326 410 ntBASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Gm16342-201ENSMUST00000124025 1025 ntBASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Gm44985-201ENSMUST00000206202 1016 ntBASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Gm5035-201ENSMUST00000215581 927 ntBASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC12.51□□□□□ -0.41
Usp39Q3TIX9 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 42.9 ms