Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 AC165157.4-201ENSMUST00000220587 139 ntBASIC12.56□□□□□ -0.4
Col28a1Q2UY11 AC138604.1-201ENSMUST00000226969 739 ntBASIC12.56□□□□□ -0.4
Col28a1Q2UY11 CT573086.1-201ENSMUST00000227202 1074 ntBASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 AC161252.3-201ENSMUST00000225465 1549 ntBASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Gm10728-201ENSMUST00000194292 1829 ntBASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Gm37391-201ENSMUST00000194891 2318 ntBASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Gm12585-201ENSMUST00000117307 290 ntBASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col28a1Q2UY11 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Gm15240-201ENSMUST00000118156 720 ntBASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Gm12537-201ENSMUST00000119266 1002 ntBASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Gm12070-201ENSMUST00000119551 1002 ntBASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Gm12671-201ENSMUST00000119978 1002 ntBASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Gm13292-201ENSMUST00000120014 1000 ntBASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Gm12403-201ENSMUST00000121384 959 ntBASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Gm10359-201ENSMUST00000180167 1002 ntBASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Gm12033-201ENSMUST00000180654 1002 ntBASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Gm5559-201ENSMUST00000180755 1002 ntBASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Gm4335-201ENSMUST00000182581 1004 ntBASIC12.54□□□□□ -0.4
Col28a1Q2UY11 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 AC153962.4-201ENSMUST00000217878 242 ntBASIC12.54□□□□□ -0.4
Col28a1Q2UY11 AC155286.1-201ENSMUST00000218632 448 ntBASIC12.54□□□□□ -0.4
Col28a1Q2UY11 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms