Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Gm23049-201ENSMUST00000178068 102 ntBASIC19.35■□□□□ 0.69
Col17a1Q07563 Gm28019-201ENSMUST00000178138 101 ntBASIC19.35■□□□□ 0.69
Col17a1Q07563 Gm25571-201ENSMUST00000178322 102 ntBASIC19.35■□□□□ 0.69
Col17a1Q07563 Gm25355-201ENSMUST00000178456 101 ntBASIC19.35■□□□□ 0.69
Col17a1Q07563 Gm24975-201ENSMUST00000178492 101 ntBASIC19.35■□□□□ 0.69
Col17a1Q07563 Gm23189-201ENSMUST00000178954 102 ntBASIC19.35■□□□□ 0.69
Col17a1Q07563 Gm25100-201ENSMUST00000179750 101 ntBASIC19.35■□□□□ 0.69
Col17a1Q07563 Gm23064-201ENSMUST00000179866 101 ntBASIC19.35■□□□□ 0.69
Col17a1Q07563 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC19.35■□□□□ 0.69
Col17a1Q07563 Timm9-210ENSMUST00000221892 734 ntTSL 5 BASIC19.35■□□□□ 0.69
Col17a1Q07563 Isca2-206ENSMUST00000222449 374 ntTSL 2 BASIC19.35■□□□□ 0.69
Col17a1Q07563 D730050B12Rik-201ENSMUST00000223149 585 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col17a1Q07563 Gzmk-201ENSMUST00000038212 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col17a1Q07563 H2-Aa-201ENSMUST00000040655 1132 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col17a1Q07563 P2rx1-202ENSMUST00000092938 1119 ntTSL 5 BASIC19.35■□□□□ 0.69
Col17a1Q07563 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col17a1Q07563 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
Col17a1Q07563 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col17a1Q07563 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col17a1Q07563 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Col17a1Q07563 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col17a1Q07563 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Col17a1Q07563 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col17a1Q07563 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Col17a1Q07563 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
Col17a1Q07563 Gm6322-201ENSMUST00000118789 1004 ntBASIC19.34■□□□□ 0.69
Col17a1Q07563 Gm13530-201ENSMUST00000134014 390 ntTSL 2 BASIC19.34■□□□□ 0.69
Col17a1Q07563 1700112K13Rik-201ENSMUST00000141892 701 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col17a1Q07563 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC19.34■□□□□ 0.69
Col17a1Q07563 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col17a1Q07563 Gm5210-201ENSMUST00000182150 1010 ntBASIC19.34■□□□□ 0.69
Col17a1Q07563 Mir6953-201ENSMUST00000184745 68 ntBASIC19.34■□□□□ 0.69
Col17a1Q07563 Gm38228-201ENSMUST00000193169 1293 ntBASIC19.34■□□□□ 0.69
Col17a1Q07563 Gm2474-201ENSMUST00000195162 559 ntBASIC19.34■□□□□ 0.69
Col17a1Q07563 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col17a1Q07563 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col17a1Q07563 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col17a1Q07563 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
Col17a1Q07563 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col17a1Q07563 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col17a1Q07563 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col17a1Q07563 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col17a1Q07563 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Col17a1Q07563 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col17a1Q07563 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Col17a1Q07563 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC19.33■□□□□ 0.68
Col17a1Q07563 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col17a1Q07563 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Col17a1Q07563 Gm24934-201ENSMUST00000103764 111 ntBASIC19.33■□□□□ 0.68
Col17a1Q07563 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
Col17a1Q07563 Kdm6bos-201ENSMUST00000129924 840 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Col17a1Q07563 Gm14232-201ENSMUST00000137176 446 ntTSL 3 BASIC19.33■□□□□ 0.68
Col17a1Q07563 Gm8815-201ENSMUST00000173809 620 ntBASIC19.33■□□□□ 0.68
Col17a1Q07563 Gm18552-201ENSMUST00000187425 538 ntBASIC19.33■□□□□ 0.68
Col17a1Q07563 Gm7183-201ENSMUST00000213870 1005 ntBASIC19.33■□□□□ 0.68
Col17a1Q07563 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col17a1Q07563 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Col17a1Q07563 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col17a1Q07563 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col17a1Q07563 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col17a1Q07563 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col17a1Q07563 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col17a1Q07563 Trim34b-202ENSMUST00000180136 1535 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Col17a1Q07563 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC19.32■□□□□ 0.68
Col17a1Q07563 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Col17a1Q07563 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC19.32■□□□□ 0.68
Col17a1Q07563 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Col17a1Q07563 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC19.32■□□□□ 0.68
Col17a1Q07563 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col17a1Q07563 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col17a1Q07563 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Col17a1Q07563 Gm13910-201ENSMUST00000121752 1428 ntBASIC19.32■□□□□ 0.68
Col17a1Q07563 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Col17a1Q07563 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC19.32■□□□□ 0.68
Col17a1Q07563 Nme6-214ENSMUST00000200468 865 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
Col17a1Q07563 Mylpf-206ENSMUST00000206772 653 ntTSL 3 BASIC19.32■□□□□ 0.68
Col17a1Q07563 Gm45592-201ENSMUST00000209605 1043 ntBASIC19.32■□□□□ 0.68
Col17a1Q07563 AC154759.1-201ENSMUST00000224137 1159 ntBASIC19.32■□□□□ 0.68
Col17a1Q07563 Tspo2-201ENSMUST00000024794 956 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col17a1Q07563 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Col17a1Q07563 AC153524.2-201ENSMUST00000218351 1375 ntTSL 5 BASIC19.32■□□□□ 0.68
Col17a1Q07563 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col17a1Q07563 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col17a1Q07563 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col17a1Q07563 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col17a1Q07563 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col17a1Q07563 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col17a1Q07563 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col17a1Q07563 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col17a1Q07563 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col17a1Q07563 Pttg1-203ENSMUST00000101340 700 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Col17a1Q07563 Pttg1-205ENSMUST00000118368 696 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Col17a1Q07563 Krtcap2-204ENSMUST00000168900 582 ntTSL 3 BASIC19.31■□□□□ 0.68
Col17a1Q07563 Gm42816-201ENSMUST00000198433 325 ntBASIC19.31■□□□□ 0.68
Col17a1Q07563 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col17a1Q07563 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col17a1Q07563 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col17a1Q07563 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col17a1Q07563 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Col17a1Q07563 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms