Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cxcl12P40224 Mir339-201ENSMUST00000083659 96 ntBASIC13.21□□□□□ -0.29
Cxcl12P40224 Gm21811-201ENSMUST00000096485 930 ntBASIC13.21□□□□□ -0.29
Cxcl12P40224 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cxcl12P40224 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Cxcl12P40224 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC13.21□□□□□ -0.29
Cxcl12P40224 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Cxcl12P40224 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cxcl12P40224 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cxcl12P40224 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cxcl12P40224 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cxcl12P40224 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Cxcl12P40224 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.3
Cxcl12P40224 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cxcl12P40224 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Cxcl12P40224 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
Cxcl12P40224 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
Cxcl12P40224 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Cxcl12P40224 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cxcl12P40224 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cxcl12P40224 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cxcl12P40224 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC13.21□□□□□ -0.3
Cxcl12P40224 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cxcl12P40224 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC13.2□□□□□ -0.3
Cxcl12P40224 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Cxcl12P40224 Olfr269-ps1-201ENSMUST00000120783 302 ntBASIC13.2□□□□□ -0.3
Cxcl12P40224 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC13.2□□□□□ -0.3
Cxcl12P40224 Gm38210-201ENSMUST00000191944 809 ntBASIC13.2□□□□□ -0.3
Cxcl12P40224 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC13.2□□□□□ -0.3
Cxcl12P40224 Gm18038-201ENSMUST00000197900 485 ntBASIC13.2□□□□□ -0.3
Cxcl12P40224 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC13.2□□□□□ -0.3
Cxcl12P40224 AC099645.1-201ENSMUST00000226476 1105 ntBASIC13.2□□□□□ -0.3
Cxcl12P40224 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Cxcl12P40224 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Cxcl12P40224 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Cxcl12P40224 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Cxcl12P40224 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
Cxcl12P40224 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Cxcl12P40224 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cxcl12P40224 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Cxcl12P40224 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Cxcl12P40224 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Cxcl12P40224 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Cxcl12P40224 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC13.19□□□□□ -0.3
Cxcl12P40224 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
Cxcl12P40224 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Cxcl12P40224 Gm12501-201ENSMUST00000119163 529 ntBASIC13.19□□□□□ -0.3
Cxcl12P40224 Gm11340-201ENSMUST00000119226 412 ntBASIC13.19□□□□□ -0.3
Cxcl12P40224 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC13.19□□□□□ -0.3
Cxcl12P40224 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC13.19□□□□□ -0.3
Cxcl12P40224 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC13.19□□□□□ -0.3
Cxcl12P40224 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
Cxcl12P40224 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Gm37246-201ENSMUST00000192665 835 ntBASIC13.19□□□□□ -0.3
Cxcl12P40224 1700039I01Rik-201ENSMUST00000194370 479 ntBASIC13.19□□□□□ -0.3
Cxcl12P40224 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC13.19□□□□□ -0.3
Cxcl12P40224 Gm19287-201ENSMUST00000203190 358 ntBASIC13.19□□□□□ -0.3
Cxcl12P40224 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
Cxcl12P40224 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC13.19□□□□□ -0.3
Cxcl12P40224 CT030637.1-201ENSMUST00000228016 669 ntBASIC13.19□□□□□ -0.3
Cxcl12P40224 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms