Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Gm25063-201ENSMUST00000104666 94 ntBASIC10.34□□□□□ -0.75
Chd6A3KFM7 Gm13171-201ENSMUST00000117233 391 ntBASIC10.34□□□□□ -0.75
Chd6A3KFM7 Gm14004-201ENSMUST00000138875 590 ntTSL 2 BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Fbxl12-205ENSMUST00000140702 1555 ntBASIC10.34□□□□□ -0.75
Chd6A3KFM7 Rrm2b-207ENSMUST00000146821 420 ntTSL 5 BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Gm8018-201ENSMUST00000173536 789 ntBASIC10.34□□□□□ -0.75
Chd6A3KFM7 Mir6407-201ENSMUST00000184510 101 ntBASIC10.34□□□□□ -0.75
Chd6A3KFM7 Mir6953-201ENSMUST00000184745 68 ntBASIC10.34□□□□□ -0.75
Chd6A3KFM7 Gm28529-201ENSMUST00000186159 387 ntTSL 3 BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC10.34□□□□□ -0.75
Chd6A3KFM7 Ighv1-2-201ENSMUST00000195325 378 ntBASIC10.34□□□□□ -0.75
Chd6A3KFM7 Gm44647-201ENSMUST00000207402 428 ntBASIC10.34□□□□□ -0.75
Chd6A3KFM7 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Harbi1-202ENSMUST00000111322 1316 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Gm12666-201ENSMUST00000123179 764 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Gm14232-201ENSMUST00000137176 446 ntTSL 3 BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Gm29410-201ENSMUST00000188383 694 ntBASIC10.34□□□□□ -0.75
Chd6A3KFM7 Eef1b2-209ENSMUST00000188524 681 ntTSL 3 BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Gm45060-201ENSMUST00000203293 593 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 AC165260.2-203ENSMUST00000224237 336 ntBASIC10.34□□□□□ -0.75
Chd6A3KFM7 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Izumo1r-202ENSMUST00000069408 1172 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Chd6A3KFM7 Gm16380-201ENSMUST00000077997 478 ntBASIC10.34□□□□□ -0.75
Chd6A3KFM7 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Sertm1-202ENSMUST00000162201 2899 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Tia1-211ENSMUST00000130967 1445 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Gm15569-201ENSMUST00000133675 594 ntTSL 3 BASIC10.33□□□□□ -0.76
Chd6A3KFM7 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Gm5650-201ENSMUST00000209641 598 ntBASIC10.33□□□□□ -0.76
Chd6A3KFM7 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC10.33□□□□□ -0.76
Chd6A3KFM7 1810013D15Rik-201ENSMUST00000029827 300 ntTSL 5 BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Gm7049-201ENSMUST00000223520 1712 ntBASIC10.33□□□□□ -0.76
Chd6A3KFM7 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Gm16071-201ENSMUST00000119589 793 ntBASIC10.33□□□□□ -0.76
Chd6A3KFM7 Gm15725-201ENSMUST00000119947 1090 ntBASIC10.33□□□□□ -0.76
Chd6A3KFM7 Gm14704-201ENSMUST00000120300 874 ntBASIC10.33□□□□□ -0.76
Chd6A3KFM7 7420461P10Rik-201ENSMUST00000169439 781 ntAPPRIS P2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Gm17826-201ENSMUST00000189720 798 ntBASIC10.33□□□□□ -0.76
Chd6A3KFM7 Gm29763-201ENSMUST00000205306 616 ntBASIC10.33□□□□□ -0.76
Chd6A3KFM7 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC10.33□□□□□ -0.76
Chd6A3KFM7 Gm9129-201ENSMUST00000218173 1689 ntBASIC10.32□□□□□ -0.76
Chd6A3KFM7 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
Chd6A3KFM7 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC10.32□□□□□ -0.76
Chd6A3KFM7 Gm16237-201ENSMUST00000156666 1319 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Chd6A3KFM7 Fopnl-202ENSMUST00000120707 1414 ntAPPRIS ALT2 TSL 5 BASIC10.32□□□□□ -0.76
Chd6A3KFM7 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Chd6A3KFM7 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Chd6A3KFM7 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC10.32□□□□□ -0.76
Chd6A3KFM7 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC10.32□□□□□ -0.76
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms