Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Scn11aQ9R053 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Scn11aQ9R053 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Scn11aQ9R053 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC15.06■□□□□ 0
Scn11aQ9R053 Gm17812-201ENSMUST00000204935 318 ntBASIC15.06■□□□□ 0
Scn11aQ9R053 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC15.06■□□□□ 0
Scn11aQ9R053 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Scn11aQ9R053 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Scn11aQ9R053 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC15.06■□□□□ 0
Scn11aQ9R053 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Scn11aQ9R053 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC15.05■□□□□ 0
Scn11aQ9R053 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Scn11aQ9R053 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
Scn11aQ9R053 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Scn11aQ9R053 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
Scn11aQ9R053 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
Scn11aQ9R053 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC15.05■□□□□ -0
Scn11aQ9R053 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Scn11aQ9R053 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC15.05■□□□□ -0
Scn11aQ9R053 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Scn11aQ9R053 Gm13611-201ENSMUST00000118269 318 ntBASIC15.05■□□□□ -0
Scn11aQ9R053 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC15.05■□□□□ -0
Scn11aQ9R053 Gm9022-201ENSMUST00000182482 992 ntBASIC15.05■□□□□ -0
Scn11aQ9R053 Gm10371-202ENSMUST00000228010 1081 ntBASIC15.05■□□□□ -0
Scn11aQ9R053 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Scn11aQ9R053 Ntng1-201ENSMUST00000051253 327 ntBASIC15.05■□□□□ -0
Scn11aQ9R053 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC15.05■□□□□ -0
Scn11aQ9R053 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Scn11aQ9R053 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Scn11aQ9R053 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC15.05■□□□□ -0
Scn11aQ9R053 Gm42863-201ENSMUST00000197875 2958 ntBASIC15.05■□□□□ -0
Scn11aQ9R053 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Scn11aQ9R053 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC15.05■□□□□ -0
Scn11aQ9R053 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Scn11aQ9R053 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Scn11aQ9R053 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Scn11aQ9R053 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC15.04■□□□□ -0
Scn11aQ9R053 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Scn11aQ9R053 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
Scn11aQ9R053 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Scn11aQ9R053 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Scn11aQ9R053 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Scn11aQ9R053 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC15.04■□□□□ -0
Scn11aQ9R053 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Scn11aQ9R053 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC15.04■□□□□ -0
Scn11aQ9R053 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Scn11aQ9R053 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Scn11aQ9R053 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC15.04■□□□□ -0
Scn11aQ9R053 Coa3-202ENSMUST00000168089 291 ntTSL 3 BASIC15.04■□□□□ -0
Scn11aQ9R053 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC15.04■□□□□ -0
Scn11aQ9R053 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
Scn11aQ9R053 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC15.04■□□□□ -0
Scn11aQ9R053 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Scn11aQ9R053 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Scn11aQ9R053 Mlf1-201ENSMUST00000061322 1113 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
Scn11aQ9R053 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Scn11aQ9R053 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC15.04■□□□□ -0
Scn11aQ9R053 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Scn11aQ9R053 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC15.04■□□□□ -0
Scn11aQ9R053 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Scn11aQ9R053 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Scn11aQ9R053 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC15.04■□□□□ -0
Scn11aQ9R053 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Scn11aQ9R053 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Scn11aQ9R053 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC15.04■□□□□ -0
Scn11aQ9R053 Gm44065-201ENSMUST00000203184 3527 ntBASIC15.04■□□□□ -0
Scn11aQ9R053 Gm13996-201ENSMUST00000118456 430 ntBASIC15.03■□□□□ -0
Scn11aQ9R053 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC15.03■□□□□ -0
Scn11aQ9R053 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Gm5616-201ENSMUST00000165252 384 ntBASIC15.03■□□□□ -0
Scn11aQ9R053 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Gm8741-201ENSMUST00000174736 384 ntBASIC15.03■□□□□ -0
Scn11aQ9R053 Gm7003-201ENSMUST00000195089 312 ntBASIC15.03■□□□□ -0
Scn11aQ9R053 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC15.03■□□□□ -0
Scn11aQ9R053 Gm45433-201ENSMUST00000209386 247 ntBASIC15.03■□□□□ -0
Scn11aQ9R053 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC15.03■□□□□ -0
Scn11aQ9R053 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Scn11aQ9R053 Gm13812-201ENSMUST00000118061 1347 ntBASIC15.03■□□□□ -0
Scn11aQ9R053 Gm13810-201ENSMUST00000118584 1347 ntBASIC15.03■□□□□ -0
Scn11aQ9R053 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Gm13142-201ENSMUST00000117213 1453 ntBASIC15.03■□□□□ -0
Scn11aQ9R053 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Scn11aQ9R053 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
Scn11aQ9R053 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC15.03■□□□□ -0
Scn11aQ9R053 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Scn11aQ9R053 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC15.03■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms