Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 AC158982.1-201ENSMUST00000228377 901 ntBASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Gm5161-201ENSMUST00000075243 853 ntBASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Gm43677-201ENSMUST00000198098 2378 ntBASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Lima1Q9ERG0 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Gm9025-201ENSMUST00000122415 1575 ntBASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Gm19078-201ENSMUST00000206311 727 ntBASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Gm7730-201ENSMUST00000212486 454 ntBASIC12.75□□□□□ -0.37
Lima1Q9ERG0 AC125206.2-201ENSMUST00000217454 574 ntBASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 AC113060.1-201ENSMUST00000225689 1573 ntBASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Gm5422-201ENSMUST00000050717 2721 ntBASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Lima1Q9ERG0 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Gm11524-201ENSMUST00000119349 807 ntBASIC12.74□□□□□ -0.37
Lima1Q9ERG0 Gm12485-201ENSMUST00000119641 291 ntBASIC12.74□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 52.1 ms