Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Gm11400-201ENSMUST00000120853 1214 ntBASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Gm44985-201ENSMUST00000206202 1016 ntBASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Nynrin-201ENSMUST00000100529 6990 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Gm15459-201ENSMUST00000117405 1941 ntBASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Gm8355-201ENSMUST00000177767 1941 ntBASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Gm42853-201ENSMUST00000201273 1387 ntBASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Gm7553-201ENSMUST00000185805 1426 ntBASIC12.03□□□□□ -0.48
Cdc40Q9DC48 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Cdc40Q9DC48 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Cdc40Q9DC48 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Cdc40Q9DC48 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC12.02□□□□□ -0.48
Cdc40Q9DC48 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Cdc40Q9DC48 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Cdc40Q9DC48 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Cdc40Q9DC48 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Cdc40Q9DC48 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Cdc40Q9DC48 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Cdc40Q9DC48 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Cdc40Q9DC48 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Cdc40Q9DC48 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Cdc40Q9DC48 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Gm8213-201ENSMUST00000118191 441 ntBASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Gm13369-201ENSMUST00000119442 987 ntBASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Gm16177-201ENSMUST00000120728 718 ntBASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Gm6161-201ENSMUST00000121942 1102 ntBASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Gm6254-201ENSMUST00000168178 1072 ntBASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Gm6153-201ENSMUST00000172004 1058 ntBASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Gm5641-202ENSMUST00000198699 1080 ntBASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Gm45880-201ENSMUST00000213041 853 ntBASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 AC173210.1-201ENSMUST00000222341 1131 ntBASIC12.02□□□□□ -0.49
Cdc40Q9DC48 CT573086.1-201ENSMUST00000227202 1074 ntBASIC12.02□□□□□ -0.49
Cdc40Q9DC48 AC134335.2-201ENSMUST00000227660 440 ntBASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Gm11661-201ENSMUST00000121761 1327 ntBASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Cdc40Q9DC48 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 53 ms