Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Gm12291-201ENSMUST00000121627 311 ntBASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Gm16479-201ENSMUST00000121706 932 ntBASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Gm2231-201ENSMUST00000125661 612 ntBASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 AC154305.4-201ENSMUST00000224520 614 ntBASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Gm15163-201ENSMUST00000120749 1302 ntBASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx56Q9D0R4 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Ddx56Q9D0R4 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Ddx56Q9D0R4 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Ddx56Q9D0R4 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Ddx56Q9D0R4 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 AC241621.2-201ENSMUST00000223991 2151 ntBASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Gm11637-201ENSMUST00000120601 592 ntBASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Gm27847-201ENSMUST00000183711 107 ntBASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Gm27375-201ENSMUST00000183799 107 ntBASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Gm27839-201ENSMUST00000184242 106 ntBASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Gm3139-202ENSMUST00000201138 1303 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Gm3183-203ENSMUST00000202911 1303 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx56Q9D0R4 Gm43045-201ENSMUST00000198725 2095 ntBASIC13.57□□□□□ -0.24
Ddx56Q9D0R4 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Ddx56Q9D0R4 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC13.57□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 52.8 ms