Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Gm42853-201ENSMUST00000201273 1387 ntBASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Gm5385-201ENSMUST00000118988 1559 ntBASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Gm27572-201ENSMUST00000183702 255 ntBASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Gm43818-201ENSMUST00000200605 466 ntBASIC14.47□□□□□ -0.09
Smc1aQ9CU62 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Gm18473-201ENSMUST00000220543 868 ntBASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Olfr582-201ENSMUST00000098212 960 ntBASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Gm13859-201ENSMUST00000119936 1423 ntBASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Smc1aQ9CU62 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Gm9279-201ENSMUST00000223175 1606 ntBASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Gm8565-201ENSMUST00000183259 1014 ntBASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Gm5370-201ENSMUST00000187187 574 ntBASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Gm4971-201ENSMUST00000205991 1108 ntBASIC14.46□□□□□ -0.09
Smc1aQ9CU62 AC154171.1-201ENSMUST00000224610 643 ntBASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Smc1aQ9CU62 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Smc1aQ9CU62 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC14.46□□□□□ -0.1
Smc1aQ9CU62 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Smc1aQ9CU62 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Smc1aQ9CU62 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Smc1aQ9CU62 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Smc1aQ9CU62 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Smc1aQ9CU62 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Smc1aQ9CU62 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Smc1aQ9CU62 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Gm11661-201ENSMUST00000121761 1327 ntBASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Rnf17-202ENSMUST00000223627 2077 ntBASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Smc1aQ9CU62 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms