Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Matn2-206ENSMUST00000228570 2798 ntBASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Usp40Q8BWR4 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Gm2260-201ENSMUST00000184965 657 ntBASIC17.65■□□□□ 0.42
Usp40Q8BWR4 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Usp40Q8BWR4 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Usp40Q8BWR4 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Usp40Q8BWR4 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp40Q8BWR4 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp40Q8BWR4 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC17.64■□□□□ 0.41
Usp40Q8BWR4 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Usp40Q8BWR4 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp40Q8BWR4 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC17.64■□□□□ 0.41
Usp40Q8BWR4 Mir5132-201ENSMUST00000175166 71 ntBASIC17.64■□□□□ 0.41
Usp40Q8BWR4 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC17.64■□□□□ 0.41
Usp40Q8BWR4 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp40Q8BWR4 AC161537.1-201ENSMUST00000226199 1015 ntBASIC17.64■□□□□ 0.41
Usp40Q8BWR4 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Usp40Q8BWR4 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Usp40Q8BWR4 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp40Q8BWR4 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp40Q8BWR4 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC17.64■□□□□ 0.41
Usp40Q8BWR4 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Usp40Q8BWR4 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Usp40Q8BWR4 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp40Q8BWR4 AC137842.1-201ENSMUST00000227896 2064 ntBASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Gm24845-201ENSMUST00000158034 109 ntBASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms