Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Gm26361-201ENSMUST00000158868 186 ntBASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Mir6979-201ENSMUST00000183927 56 ntBASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Gm19208-201ENSMUST00000213861 912 ntBASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3aQ3ULJ3 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Gm12217-201ENSMUST00000118858 696 ntBASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Gm14208-201ENSMUST00000119645 678 ntBASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 B9d1os-201ENSMUST00000137010 674 ntBASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Gm37201-201ENSMUST00000191845 523 ntBASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Abhd11os-203ENSMUST00000222613 363 ntBASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 AC108416.1-202ENSMUST00000228927 1201 ntBASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3aQ3ULJ3 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 AC123665.1-201ENSMUST00000228204 438 ntBASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Mir339-201ENSMUST00000083659 96 ntBASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Gm2673-201ENSMUST00000120958 1608 ntBASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3aQ3ULJ3 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 55.7 ms