Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm9025-201ENSMUST00000122415 1575 ntBASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 AC113060.1-201ENSMUST00000225689 1573 ntBASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Mir6392-201ENSMUST00000184924 108 ntBASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 AC154687.2-201ENSMUST00000223853 640 ntBASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Gm37472-201ENSMUST00000192342 4052 ntBASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC12.57□□□□□ -0.4
Col28a1Q2UY11 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Gm8131-201ENSMUST00000213783 1570 ntBASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Gm15824-201ENSMUST00000119516 955 ntBASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Gm6161-201ENSMUST00000121942 1102 ntBASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Gm6254-201ENSMUST00000168178 1072 ntBASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Gm6153-201ENSMUST00000172004 1058 ntBASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Gm27772-201ENSMUST00000184900 187 ntBASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Gm5641-202ENSMUST00000198699 1080 ntBASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Gm6266-201ENSMUST00000203844 806 ntBASIC12.56□□□□□ -0.4
Col28a1Q2UY11 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col28a1Q2UY11 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC12.56□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms