Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Cux1P53564 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Cux1P53564 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC19.54■□□□□ 0.72
Cux1P53564 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Cux1P53564 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cux1P53564 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Cux1P53564 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Cux1P53564 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
Cux1P53564 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cux1P53564 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Cux1P53564 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Cux1P53564 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Cux1P53564 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Cux1P53564 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Cux1P53564 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cux1P53564 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cux1P53564 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Cux1P53564 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cux1P53564 AC153954.1-201ENSMUST00000216959 255 ntBASIC19.54■□□□□ 0.72
Cux1P53564 AC154849.4-201ENSMUST00000224868 365 ntBASIC19.54■□□□□ 0.72
Cux1P53564 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cux1P53564 Rln1-201ENSMUST00000044143 745 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cux1P53564 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cux1P53564 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Cux1P53564 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
Cux1P53564 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Cux1P53564 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cux1P53564 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cux1P53564 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Cux1P53564 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Cux1P53564 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Cux1P53564 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Cux1P53564 Retreg1-206ENSMUST00000228306 1430 ntBASIC19.53■□□□□ 0.72
Cux1P53564 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Cux1P53564 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC19.53■□□□□ 0.72
Cux1P53564 Gm9022-201ENSMUST00000182482 992 ntBASIC19.53■□□□□ 0.72
Cux1P53564 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Cux1P53564 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC19.53■□□□□ 0.72
Cux1P53564 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC19.53■□□□□ 0.72
Cux1P53564 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Cux1P53564 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Cux1P53564 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Cux1P53564 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Cux1P53564 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cux1P53564 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cux1P53564 Gm12196-201ENSMUST00000120954 262 ntBASIC19.52■□□□□ 0.72
Cux1P53564 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cux1P53564 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC19.52■□□□□ 0.72
Cux1P53564 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC19.52■□□□□ 0.72
Cux1P53564 Gm270-201ENSMUST00000223010 976 ntBASIC19.52■□□□□ 0.72
Cux1P53564 Ankrd7-201ENSMUST00000031489 1190 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cux1P53564 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cux1P53564 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Cux1P53564 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cux1P53564 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cux1P53564 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cux1P53564 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cux1P53564 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cux1P53564 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cux1P53564 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Cux1P53564 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Cux1P53564 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cux1P53564 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cux1P53564 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cux1P53564 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Cux1P53564 Gm12165-201ENSMUST00000117047 342 ntBASIC19.51■□□□□ 0.71
Cux1P53564 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
Cux1P53564 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC19.51■□□□□ 0.71
Cux1P53564 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC19.51■□□□□ 0.71
Cux1P53564 Gm3508-201ENSMUST00000186012 792 ntBASIC19.51■□□□□ 0.71
Cux1P53564 Gm44958-201ENSMUST00000203734 736 ntBASIC19.51■□□□□ 0.71
Cux1P53564 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Cux1P53564 Gm10179-201ENSMUST00000086233 688 ntBASIC19.51■□□□□ 0.71
Cux1P53564 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Cux1P53564 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cux1P53564 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cux1P53564 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cux1P53564 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
Cux1P53564 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cux1P53564 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Cux1P53564 Platr7-201ENSMUST00000181466 1334 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Cux1P53564 Gm19863-201ENSMUST00000192480 2218 ntBASIC19.51■□□□□ 0.71
Cux1P53564 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Cux1P53564 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cux1P53564 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC19.51■□□□□ 0.71
Cux1P53564 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC19.51■□□□□ 0.71
Cux1P53564 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Cux1P53564 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cux1P53564 Gm44999-201ENSMUST00000207456 1493 ntBASIC19.51■□□□□ 0.71
Cux1P53564 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cux1P53564 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC19.51■□□□□ 0.71
Cux1P53564 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC19.51■□□□□ 0.71
Cux1P53564 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
Cux1P53564 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC19.51■□□□□ 0.71
Cux1P53564 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC19.51■□□□□ 0.71
Cux1P53564 AC133602.1-201ENSMUST00000227510 509 ntBASIC19.51■□□□□ 0.71
Cux1P53564 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cux1P53564 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cux1P53564 Gm5455-201ENSMUST00000058710 715 ntBASIC19.51■□□□□ 0.71
Cux1P53564 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms