Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Shmt1P50431 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Gm44094-201ENSMUST00000204703 2030 ntBASIC13.66□□□□□ -0.22
Shmt1P50431 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC13.66□□□□□ -0.22
Shmt1P50431 Gm12291-201ENSMUST00000121627 311 ntBASIC13.66□□□□□ -0.22
Shmt1P50431 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC13.66□□□□□ -0.22
Shmt1P50431 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC13.66□□□□□ -0.22
Shmt1P50431 Gm43416-201ENSMUST00000201916 1015 ntBASIC13.66□□□□□ -0.22
Shmt1P50431 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC13.66□□□□□ -0.22
Shmt1P50431 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC13.66□□□□□ -0.22
Shmt1P50431 Gm45930-201ENSMUST00000221330 292 ntBASIC13.66□□□□□ -0.22
Shmt1P50431 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC13.66□□□□□ -0.22
Shmt1P50431 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Gm37861-201ENSMUST00000193534 2869 ntBASIC13.66□□□□□ -0.22
Shmt1P50431 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Shmt1P50431 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shmt1P50431 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Shmt1P50431 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Shmt1P50431 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
Shmt1P50431 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC13.65□□□□□ -0.22
Shmt1P50431 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Shmt1P50431 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Shmt1P50431 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Shmt1P50431 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
Shmt1P50431 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Shmt1P50431 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Shmt1P50431 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Shmt1P50431 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
Shmt1P50431 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Shmt1P50431 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Shmt1P50431 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Shmt1P50431 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC13.65□□□□□ -0.22
Shmt1P50431 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Shmt1P50431 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Shmt1P50431 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC13.65□□□□□ -0.22
Shmt1P50431 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC13.65□□□□□ -0.22
Shmt1P50431 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC13.65□□□□□ -0.22
Shmt1P50431 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC13.65□□□□□ -0.22
Shmt1P50431 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC13.65□□□□□ -0.22
Shmt1P50431 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC13.65□□□□□ -0.22
Shmt1P50431 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Shmt1P50431 Gm18584-201ENSMUST00000203098 964 ntBASIC13.65□□□□□ -0.22
Shmt1P50431 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC13.65□□□□□ -0.22
Shmt1P50431 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC13.65□□□□□ -0.22
Shmt1P50431 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
Shmt1P50431 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Shmt1P50431 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Shmt1P50431 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Shmt1P50431 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Shmt1P50431 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Shmt1P50431 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.23
Shmt1P50431 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Shmt1P50431 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Gm8617-201ENSMUST00000118796 2222 ntBASIC13.64□□□□□ -0.23
Shmt1P50431 Gm44851-201ENSMUST00000205735 2309 ntBASIC13.64□□□□□ -0.23
Shmt1P50431 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC13.64□□□□□ -0.23
Shmt1P50431 Gm11793-201ENSMUST00000120433 981 ntBASIC13.64□□□□□ -0.23
Shmt1P50431 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Gm8738-201ENSMUST00000172606 329 ntBASIC13.64□□□□□ -0.23
Shmt1P50431 Gm27516-201ENSMUST00000184237 98 ntBASIC13.64□□□□□ -0.23
Shmt1P50431 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC13.64□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms