Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Rfx1P48377 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Rfx1P48377 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Rfx1P48377 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Rfx1P48377 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Rfx1P48377 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC15.43■□□□□ 0.06
Rfx1P48377 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Rfx1P48377 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Rfx1P48377 Nupl1-206ENSMUST00000225111 2936 ntBASIC15.43■□□□□ 0.06
Rfx1P48377 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Rfx1P48377 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC15.43■□□□□ 0.06
Rfx1P48377 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Rfx1P48377 Gm6736-201ENSMUST00000166583 948 ntBASIC15.43■□□□□ 0.06
Rfx1P48377 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Rfx1P48377 Rpl7-201ENSMUST00000058437 1163 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Rfx1P48377 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC15.43■□□□□ 0.06
Rfx1P48377 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC15.43■□□□□ 0.06
Rfx1P48377 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC15.43■□□□□ 0.06
Rfx1P48377 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Rfx1P48377 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC15.43■□□□□ 0.06
Rfx1P48377 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Rfx1P48377 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Rfx1P48377 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Rfx1P48377 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Rfx1P48377 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Rfx1P48377 Gm10040-201ENSMUST00000080726 1662 ntBASIC15.42■□□□□ 0.06
Rfx1P48377 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC15.42■□□□□ 0.06
Rfx1P48377 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Rfx1P48377 Gm1995-201ENSMUST00000220838 2602 ntBASIC15.42■□□□□ 0.06
Rfx1P48377 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
Rfx1P48377 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
Rfx1P48377 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
Rfx1P48377 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Gm21854-201ENSMUST00000179901 471 ntBASIC15.42■□□□□ 0.06
Rfx1P48377 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC15.42■□□□□ 0.06
Rfx1P48377 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Gm6210-201ENSMUST00000204734 1942 ntBASIC15.42■□□□□ 0.06
Rfx1P48377 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC15.42■□□□□ 0.06
Rfx1P48377 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
Rfx1P48377 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Gm7104-201ENSMUST00000179741 2532 ntBASIC15.42■□□□□ 0.06
Rfx1P48377 Gm13722-201ENSMUST00000117964 3066 ntBASIC15.42■□□□□ 0.06
Rfx1P48377 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Rfx1P48377 Gm6263-201ENSMUST00000120029 1342 ntBASIC15.42■□□□□ 0.06
Rfx1P48377 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Rfx1P48377 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC15.41■□□□□ 0.06
Rfx1P48377 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC15.41■□□□□ 0.06
Rfx1P48377 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC15.41■□□□□ 0.06
Rfx1P48377 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Gm11524-201ENSMUST00000119349 807 ntBASIC15.41■□□□□ 0.06
Rfx1P48377 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
Rfx1P48377 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC15.41■□□□□ 0.06
Rfx1P48377 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC15.41■□□□□ 0.06
Rfx1P48377 Gm5279-201ENSMUST00000199575 745 ntBASIC15.41■□□□□ 0.06
Rfx1P48377 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC15.41■□□□□ 0.06
Rfx1P48377 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC15.41■□□□□ 0.06
Rfx1P48377 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Rfx1P48377 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
Rfx1P48377 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC15.41■□□□□ 0.06
Rfx1P48377 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms