Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Col18a1P39061 Gm5537-201ENSMUST00000091117 1252 ntBASIC16.68■□□□□ 0.26
Col18a1P39061 Taar8b-201ENSMUST00000092654 1035 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Col18a1P39061 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Col18a1P39061 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col18a1P39061 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Col18a1P39061 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col18a1P39061 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Col18a1P39061 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col18a1P39061 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col18a1P39061 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
Col18a1P39061 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col18a1P39061 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col18a1P39061 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Col18a1P39061 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Col18a1P39061 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col18a1P39061 Zfp68-201ENSMUST00000063262 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col18a1P39061 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col18a1P39061 A930005H10Rik-204ENSMUST00000185681 625 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col18a1P39061 A930005H10Rik-206ENSMUST00000188260 739 ntTSL 2 BASIC16.67■□□□□ 0.26
Col18a1P39061 Gm9661-201ENSMUST00000221611 1122 ntBASIC16.67■□□□□ 0.26
Col18a1P39061 Dydc2-201ENSMUST00000022316 818 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col18a1P39061 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col18a1P39061 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col18a1P39061 Gm16237-201ENSMUST00000156666 1319 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col18a1P39061 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col18a1P39061 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC16.67■□□□□ 0.26
Col18a1P39061 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col18a1P39061 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col18a1P39061 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
Col18a1P39061 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col18a1P39061 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col18a1P39061 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Col18a1P39061 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
Col18a1P39061 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col18a1P39061 Gm43721-201ENSMUST00000199677 2313 ntBASIC16.67■□□□□ 0.26
Col18a1P39061 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col18a1P39061 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col18a1P39061 Ypel4-201ENSMUST00000090729 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col18a1P39061 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col18a1P39061 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col18a1P39061 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Gm10152-201ENSMUST00000193475 1344 ntBASIC16.66■□□□□ 0.26
Col18a1P39061 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Col18a1P39061 Gm5257-201ENSMUST00000121823 790 ntBASIC16.66■□□□□ 0.26
Col18a1P39061 Gm26989-201ENSMUST00000182608 749 ntBASIC16.66■□□□□ 0.26
Col18a1P39061 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC16.66■□□□□ 0.26
Col18a1P39061 Lgi3-203ENSMUST00000226548 1001 ntBASIC16.66■□□□□ 0.26
Col18a1P39061 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Gm23680-201ENSMUST00000083162 164 ntBASIC16.66■□□□□ 0.26
Col18a1P39061 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Col18a1P39061 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Gm19680-201ENSMUST00000095050 1513 ntBASIC16.66■□□□□ 0.26
Col18a1P39061 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 4932431P20Rik-201ENSMUST00000098602 1340 ntBASIC16.66■□□□□ 0.26
Col18a1P39061 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC16.66■□□□□ 0.26
Col18a1P39061 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Col18a1P39061 Tbata-203ENSMUST00000121297 1000 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Fxyd5-209ENSMUST00000162087 762 ntAPPRIS P3 TSL 3 BASIC16.66■□□□□ 0.26
Col18a1P39061 Gm8723-201ENSMUST00000166076 820 ntBASIC16.66■□□□□ 0.26
Col18a1P39061 Gm8701-201ENSMUST00000169259 874 ntBASIC16.66■□□□□ 0.26
Col18a1P39061 Gm13278-201ENSMUST00000177771 549 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Col18a1P39061 Gm13275-201ENSMUST00000178347 549 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Col18a1P39061 Gm13277-201ENSMUST00000178480 549 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Col18a1P39061 Gm13279-201ENSMUST00000178602 549 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Col18a1P39061 Gm13289-201ENSMUST00000179158 549 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Col18a1P39061 Gm13276-201ENSMUST00000179372 549 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Col18a1P39061 Gm13287-201ENSMUST00000179490 549 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Col18a1P39061 Gm43912-201ENSMUST00000204352 538 ntBASIC16.66■□□□□ 0.26
Col18a1P39061 AC153962.2-201ENSMUST00000219417 550 ntBASIC16.66■□□□□ 0.26
Col18a1P39061 AC154572.1-201ENSMUST00000226098 1204 ntBASIC16.66■□□□□ 0.26
Col18a1P39061 Cox17-201ENSMUST00000050273 444 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Gm13271-201ENSMUST00000094992 549 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Col18a1P39061 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC16.66■□□□□ 0.26
Col18a1P39061 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col18a1P39061 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Col18a1P39061 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col18a1P39061 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Col18a1P39061 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC16.65■□□□□ 0.26
Col18a1P39061 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Col18a1P39061 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Col18a1P39061 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
Col18a1P39061 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col18a1P39061 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC16.65■□□□□ 0.26
Col18a1P39061 Prkaca-202ENSMUST00000211558 1399 ntTSL 5 BASIC16.65■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 63.7 ms