Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Cd40lgP27548 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Cd40lgP27548 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Cd40lgP27548 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Cd40lgP27548 Gm40377-201ENSMUST00000204604 2015 ntBASIC11.96□□□□□ -0.49
Cd40lgP27548 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Cd40lgP27548 Gm5912-201ENSMUST00000122282 1438 ntBASIC11.96□□□□□ -0.49
Cd40lgP27548 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Cd40lgP27548 Gm10729-202ENSMUST00000193403 1375 ntBASIC11.96□□□□□ -0.49
Cd40lgP27548 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Cd40lgP27548 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Cd40lgP27548 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC11.96□□□□□ -0.49
Cd40lgP27548 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Cd40lgP27548 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC11.96□□□□□ -0.49
Cd40lgP27548 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Cd40lgP27548 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Cd40lgP27548 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Cd40lgP27548 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Cd40lgP27548 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC11.96□□□□□ -0.49
Cd40lgP27548 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Cd40lgP27548 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC11.96□□□□□ -0.49
Cd40lgP27548 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Cd40lgP27548 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC11.96□□□□□ -0.49
Cd40lgP27548 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Cd40lgP27548 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Cd40lgP27548 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Cd40lgP27548 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Cd40lgP27548 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
Cd40lgP27548 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Cd40lgP27548 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Cd40lgP27548 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Cd40lgP27548 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Cd40lgP27548 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Cd40lgP27548 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Cd40lgP27548 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Cd40lgP27548 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Cd40lgP27548 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Cd40lgP27548 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Cd40lgP27548 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Cd40lgP27548 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC11.96□□□□□ -0.5
Cd40lgP27548 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Cd40lgP27548 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC11.96□□□□□ -0.5
Cd40lgP27548 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Cd40lgP27548 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
Cd40lgP27548 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Cd40lgP27548 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Cd40lgP27548 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC11.96□□□□□ -0.5
Cd40lgP27548 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC11.96□□□□□ -0.5
Cd40lgP27548 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
Cd40lgP27548 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC11.95□□□□□ -0.5
Cd40lgP27548 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Cd40lgP27548 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Cd40lgP27548 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Mecom-202ENSMUST00000108270 5692 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Cd40lgP27548 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC11.95□□□□□ -0.5
Cd40lgP27548 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Ppm1l-201ENSMUST00000029355 9417 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC11.95□□□□□ -0.5
Cd40lgP27548 Gm5303-201ENSMUST00000117943 1252 ntBASIC11.95□□□□□ -0.5
Cd40lgP27548 Gm13829-201ENSMUST00000119600 138 ntBASIC11.95□□□□□ -0.5
Cd40lgP27548 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Cd40lgP27548 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC11.95□□□□□ -0.5
Cd40lgP27548 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC11.95□□□□□ -0.5
Cd40lgP27548 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC11.95□□□□□ -0.5
Cd40lgP27548 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC11.95□□□□□ -0.5
Cd40lgP27548 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC11.95□□□□□ -0.5
Cd40lgP27548 Gm6266-201ENSMUST00000203844 806 ntBASIC11.95□□□□□ -0.5
Cd40lgP27548 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC11.95□□□□□ -0.5
Cd40lgP27548 Gm18062-201ENSMUST00000208020 547 ntBASIC11.95□□□□□ -0.5
Cd40lgP27548 Gm18055-201ENSMUST00000208254 547 ntBASIC11.95□□□□□ -0.5
Cd40lgP27548 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC11.95□□□□□ -0.5
Cd40lgP27548 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC11.95□□□□□ -0.5
Cd40lgP27548 AC130829.1-201ENSMUST00000221548 494 ntBASIC11.95□□□□□ -0.5
Cd40lgP27548 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC11.95□□□□□ -0.5
Cd40lgP27548 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
Cd40lgP27548 Tctn1-201ENSMUST00000111738 5717 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 72.9 ms