Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm44831-201ENSMUST00000208469 2989 ntBASIC10.57□□□□□ -0.72
Sdc1P18828 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
Sdc1P18828 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Gm13859-201ENSMUST00000119936 1423 ntBASIC10.57□□□□□ -0.72
Sdc1P18828 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
Sdc1P18828 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC10.57□□□□□ -0.72
Sdc1P18828 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
Sdc1P18828 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC10.56□□□□□ -0.72
Sdc1P18828 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Ttc14-201ENSMUST00000099153 9661 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
Sdc1P18828 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Crkl-201ENSMUST00000006293 3863 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC10.56□□□□□ -0.72
Sdc1P18828 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC10.56□□□□□ -0.72
Sdc1P18828 Gm13385-201ENSMUST00000121089 220 ntBASIC10.56□□□□□ -0.72
Sdc1P18828 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC10.56□□□□□ -0.72
Sdc1P18828 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Gm27628-201ENSMUST00000184911 107 ntBASIC10.56□□□□□ -0.72
Sdc1P18828 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC10.56□□□□□ -0.72
Sdc1P18828 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC10.56□□□□□ -0.72
Sdc1P18828 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC10.56□□□□□ -0.72
Sdc1P18828 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC10.56□□□□□ -0.72
Sdc1P18828 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC10.56□□□□□ -0.72
Sdc1P18828 Gfm1-201ENSMUST00000077271 4078 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Ppm1l-201ENSMUST00000029355 9417 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Eif5a2-201ENSMUST00000060500 5027 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC10.56□□□□□ -0.72
Sdc1P18828 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC10.56□□□□□ -0.72
Sdc1P18828 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Sdc1P18828 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Fip1l1-204ENSMUST00000113536 4769 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Pigc-201ENSMUST00000028021 2196 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC10.55□□□□□ -0.72
Sdc1P18828 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC10.55□□□□□ -0.72
Sdc1P18828 Gm14859-201ENSMUST00000117752 357 ntBASIC10.55□□□□□ -0.72
Sdc1P18828 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC10.55□□□□□ -0.72
Sdc1P18828 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Gm10060-201ENSMUST00000212002 111 ntBASIC10.55□□□□□ -0.72
Sdc1P18828 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC10.55□□□□□ -0.72
Sdc1P18828 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC10.55□□□□□ -0.72
Sdc1P18828 Ahsa2-202ENSMUST00000109539 3583 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Zfp536-202ENSMUST00000175941 4423 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Rnf123-218ENSMUST00000178267 4309 ntAPPRIS P3 TSL 5 BASIC10.55□□□□□ -0.72
Sdc1P18828 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Gm37660-201ENSMUST00000192754 1732 ntBASIC10.55□□□□□ -0.72
Sdc1P18828 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Sptbn2-201ENSMUST00000008991 8251 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC10.55□□□□□ -0.72
Retrieved 100 of 76,532 protein–RNA pairs in 58.2 ms