Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC15.25■□□□□ 0.03
Col3a1P08121 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Col3a1P08121 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC15.25■□□□□ 0.03
Col3a1P08121 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC15.25■□□□□ 0.03
Col3a1P08121 Abhd11os-203ENSMUST00000222613 363 ntBASIC15.25■□□□□ 0.03
Col3a1P08121 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Col3a1P08121 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC15.25■□□□□ 0.03
Col3a1P08121 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC15.24■□□□□ 0.03
Col3a1P08121 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Col3a1P08121 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Gm37019-201ENSMUST00000192133 2134 ntBASIC15.24■□□□□ 0.03
Col3a1P08121 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Col3a1P08121 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
Col3a1P08121 Gm13296-201ENSMUST00000117854 997 ntBASIC15.24■□□□□ 0.03
Col3a1P08121 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC15.24■□□□□ 0.03
Col3a1P08121 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Gm32999-201ENSMUST00000192693 562 ntBASIC15.24■□□□□ 0.03
Col3a1P08121 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC15.24■□□□□ 0.03
Col3a1P08121 Gm43947-201ENSMUST00000203019 959 ntBASIC15.24■□□□□ 0.03
Col3a1P08121 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Col3a1P08121 Gm19208-201ENSMUST00000213861 912 ntBASIC15.24■□□□□ 0.03
Col3a1P08121 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Col3a1P08121 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Col3a1P08121 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Col3a1P08121 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
Col3a1P08121 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC15.24■□□□□ 0.03
Col3a1P08121 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
Col3a1P08121 Gm5846-201ENSMUST00000193146 1414 ntBASIC15.24■□□□□ 0.03
Col3a1P08121 Retreg1-206ENSMUST00000228306 1430 ntBASIC15.24■□□□□ 0.03
Col3a1P08121 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Gm37644-201ENSMUST00000192190 2270 ntBASIC15.24■□□□□ 0.03
Col3a1P08121 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC15.24■□□□□ 0.03
Col3a1P08121 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col3a1P08121 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col3a1P08121 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC15.23■□□□□ 0.03
Col3a1P08121 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col3a1P08121 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col3a1P08121 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col3a1P08121 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
Col3a1P08121 Gm5638-201ENSMUST00000118618 1258 ntBASIC15.23■□□□□ 0.03
Col3a1P08121 Gm12217-201ENSMUST00000118858 696 ntBASIC15.23■□□□□ 0.03
Col3a1P08121 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
Col3a1P08121 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC15.23■□□□□ 0.03
Col3a1P08121 AC093022.5-201ENSMUST00000226841 1079 ntBASIC15.23■□□□□ 0.03
Col3a1P08121 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col3a1P08121 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col3a1P08121 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC15.23■□□□□ 0.03
Col3a1P08121 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col3a1P08121 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col3a1P08121 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col3a1P08121 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Col3a1P08121 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col3a1P08121 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col3a1P08121 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col3a1P08121 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col3a1P08121 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col3a1P08121 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col3a1P08121 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Col3a1P08121 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Col3a1P08121 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col3a1P08121 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col3a1P08121 Gm6210-201ENSMUST00000204734 1942 ntBASIC15.22■□□□□ 0.03
Col3a1P08121 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms