Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Trim3Q9R1R2 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim3Q9R1R2 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Trim3Q9R1R2 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim3Q9R1R2 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC19.8■□□□□ 0.76
Trim3Q9R1R2 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim3Q9R1R2 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim3Q9R1R2 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Trim3Q9R1R2 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim3Q9R1R2 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Trim3Q9R1R2 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim3Q9R1R2 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim3Q9R1R2 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Trim3Q9R1R2 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim3Q9R1R2 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim3Q9R1R2 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Trim3Q9R1R2 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim3Q9R1R2 Notumos-201ENSMUST00000151998 2659 ntBASIC19.78■□□□□ 0.76
Trim3Q9R1R2 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC19.78■□□□□ 0.76
Trim3Q9R1R2 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
Trim3Q9R1R2 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim3Q9R1R2 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim3Q9R1R2 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Trim3Q9R1R2 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim3Q9R1R2 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim3Q9R1R2 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim3Q9R1R2 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Trim3Q9R1R2 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim3Q9R1R2 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Trim3Q9R1R2 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim3Q9R1R2 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC19.77■□□□□ 0.76
Trim3Q9R1R2 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim3Q9R1R2 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC19.77■□□□□ 0.76
Trim3Q9R1R2 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC19.77■□□□□ 0.76
Trim3Q9R1R2 Gm45444-201ENSMUST00000211394 898 ntBASIC19.77■□□□□ 0.76
Trim3Q9R1R2 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Trim3Q9R1R2 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim3Q9R1R2 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Trim3Q9R1R2 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
Trim3Q9R1R2 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Trim3Q9R1R2 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim3Q9R1R2 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim3Q9R1R2 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC19.76■□□□□ 0.75
Trim3Q9R1R2 Gm13238-201ENSMUST00000117655 780 ntBASIC19.76■□□□□ 0.75
Trim3Q9R1R2 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim3Q9R1R2 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim3Q9R1R2 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim3Q9R1R2 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim3Q9R1R2 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim3Q9R1R2 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Trim3Q9R1R2 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC19.75■□□□□ 0.75
Trim3Q9R1R2 Gm43566-201ENSMUST00000196851 808 ntBASIC19.75■□□□□ 0.75
Trim3Q9R1R2 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Trim3Q9R1R2 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Trim3Q9R1R2 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim3Q9R1R2 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Trim3Q9R1R2 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim3Q9R1R2 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim3Q9R1R2 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Trim3Q9R1R2 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Trim3Q9R1R2 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim3Q9R1R2 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim3Q9R1R2 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Trim3Q9R1R2 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Trim3Q9R1R2 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trim3Q9R1R2 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trim3Q9R1R2 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Trim3Q9R1R2 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC19.73■□□□□ 0.75
Trim3Q9R1R2 Gm5812-201ENSMUST00000061073 957 ntBASIC19.73■□□□□ 0.75
Trim3Q9R1R2 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim3Q9R1R2 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC19.73■□□□□ 0.75
Trim3Q9R1R2 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim3Q9R1R2 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Trim3Q9R1R2 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trim3Q9R1R2 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Trim3Q9R1R2 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
Trim3Q9R1R2 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim3Q9R1R2 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim3Q9R1R2 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Trim3Q9R1R2 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Trim3Q9R1R2 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim3Q9R1R2 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Trim3Q9R1R2 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
Trim3Q9R1R2 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim3Q9R1R2 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Trim3Q9R1R2 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim3Q9R1R2 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim3Q9R1R2 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim3Q9R1R2 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Trim3Q9R1R2 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim3Q9R1R2 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC19.71■□□□□ 0.75
Trim3Q9R1R2 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim3Q9R1R2 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim3Q9R1R2 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim3Q9R1R2 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim3Q9R1R2 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Trim3Q9R1R2 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim3Q9R1R2 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Trim3Q9R1R2 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Trim3Q9R1R2 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC19.69■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 61.5 ms