Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
Upf1Q9EPU0 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC25.04■■□□□ 1.6
Upf1Q9EPU0 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC25.04■■□□□ 1.6
Upf1Q9EPU0 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Upf1Q9EPU0 Gm5576-201ENSMUST00000075809 1236 ntBASIC25.04■■□□□ 1.6
Upf1Q9EPU0 Gm10602-201ENSMUST00000098239 609 ntBASIC25.04■■□□□ 1.6
Upf1Q9EPU0 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
Upf1Q9EPU0 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Upf1Q9EPU0 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC25.03■■□□□ 1.6
Upf1Q9EPU0 Gm43060-201ENSMUST00000200621 289 ntBASIC25.03■■□□□ 1.6
Upf1Q9EPU0 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Upf1Q9EPU0 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
Upf1Q9EPU0 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
Upf1Q9EPU0 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Upf1Q9EPU0 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Upf1Q9EPU0 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Upf1Q9EPU0 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Upf1Q9EPU0 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC25.01■■□□□ 1.59
Upf1Q9EPU0 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC25.01■■□□□ 1.59
Upf1Q9EPU0 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC25.01■■□□□ 1.59
Upf1Q9EPU0 Gm9870-201ENSMUST00000063874 645 ntBASIC25.01■■□□□ 1.59
Upf1Q9EPU0 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Upf1Q9EPU0 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC25■■□□□ 1.59
Upf1Q9EPU0 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Upf1Q9EPU0 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Upf1Q9EPU0 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
Upf1Q9EPU0 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC25■■□□□ 1.59
Upf1Q9EPU0 Nespas-201ENSMUST00000143738 1083 ntBASIC24.99■■□□□ 1.59
Upf1Q9EPU0 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC24.99■■□□□ 1.59
Upf1Q9EPU0 Gm26833-201ENSMUST00000180899 440 ntBASIC24.99■■□□□ 1.59
Upf1Q9EPU0 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Upf1Q9EPU0 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
Upf1Q9EPU0 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Upf1Q9EPU0 Gm10129-202ENSMUST00000193100 1316 ntBASIC24.98■■□□□ 1.59
Upf1Q9EPU0 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC24.98■■□□□ 1.59
Upf1Q9EPU0 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC24.98■■□□□ 1.59
Upf1Q9EPU0 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Upf1Q9EPU0 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC24.97■■□□□ 1.59
Upf1Q9EPU0 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Upf1Q9EPU0 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC24.97■■□□□ 1.59
Upf1Q9EPU0 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Upf1Q9EPU0 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Upf1Q9EPU0 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC24.96■■□□□ 1.59
Upf1Q9EPU0 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC24.96■■□□□ 1.59
Upf1Q9EPU0 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC24.96■■□□□ 1.59
Upf1Q9EPU0 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC24.95■■□□□ 1.58
Upf1Q9EPU0 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
Upf1Q9EPU0 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC24.95■■□□□ 1.58
Upf1Q9EPU0 Gm18671-201ENSMUST00000214826 683 ntBASIC24.95■■□□□ 1.58
Upf1Q9EPU0 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC24.95■■□□□ 1.58
Upf1Q9EPU0 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Upf1Q9EPU0 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
Upf1Q9EPU0 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC24.95■■□□□ 1.58
Upf1Q9EPU0 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Upf1Q9EPU0 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Upf1Q9EPU0 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
Upf1Q9EPU0 Gm12251-201ENSMUST00000117893 792 ntBASIC24.92■■□□□ 1.58
Upf1Q9EPU0 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
Upf1Q9EPU0 AV356131-201ENSMUST00000206201 750 ntBASIC24.92■■□□□ 1.58
Upf1Q9EPU0 Gm10252-201ENSMUST00000209541 832 ntBASIC24.92■■□□□ 1.58
Upf1Q9EPU0 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC24.92■■□□□ 1.58
Upf1Q9EPU0 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Upf1Q9EPU0 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Upf1Q9EPU0 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
Upf1Q9EPU0 Gm10657-201ENSMUST00000193528 1031 ntBASIC24.91■■□□□ 1.58
Upf1Q9EPU0 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Upf1Q9EPU0 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC24.9■■□□□ 1.58
Upf1Q9EPU0 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Upf1Q9EPU0 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Upf1Q9EPU0 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Upf1Q9EPU0 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Upf1Q9EPU0 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
Upf1Q9EPU0 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC24.89■■□□□ 1.58
Upf1Q9EPU0 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC24.89■■□□□ 1.58
Upf1Q9EPU0 Krt8-ps-201ENSMUST00000208495 945 ntBASIC24.89■■□□□ 1.58
Upf1Q9EPU0 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
Upf1Q9EPU0 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC24.88■■□□□ 1.57
Upf1Q9EPU0 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Upf1Q9EPU0 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Upf1Q9EPU0 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC24.87■■□□□ 1.57
Upf1Q9EPU0 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC24.87■■□□□ 1.57
Upf1Q9EPU0 Gm10033-202ENSMUST00000211874 928 ntBASIC24.87■■□□□ 1.57
Upf1Q9EPU0 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Upf1Q9EPU0 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC24.87■■□□□ 1.57
Upf1Q9EPU0 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Upf1Q9EPU0 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Upf1Q9EPU0 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Upf1Q9EPU0 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
Upf1Q9EPU0 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Upf1Q9EPU0 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
Upf1Q9EPU0 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC24.84■■□□□ 1.57
Upf1Q9EPU0 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC24.84■■□□□ 1.57
Upf1Q9EPU0 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC24.83■■□□□ 1.57
Upf1Q9EPU0 Mir7071-201ENSMUST00000184847 69 ntBASIC24.83■■□□□ 1.57
Upf1Q9EPU0 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Upf1Q9EPU0 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC24.83■■□□□ 1.57
Upf1Q9EPU0 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC24.83■■□□□ 1.56
Upf1Q9EPU0 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
Upf1Q9EPU0 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
Upf1Q9EPU0 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms