Protein–RNA interactions for Protein: Q9CQD4

Chmp1b2, Charged multivesicular body protein 1b-2, mousemouse

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp1b2Q9CQD4 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chmp1b2Q9CQD4 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC19.35■□□□□ 0.69
Chmp1b2Q9CQD4 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chmp1b2Q9CQD4 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Chmp1b2Q9CQD4 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chmp1b2Q9CQD4 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Chmp1b2Q9CQD4 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Chmp1b2Q9CQD4 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC19.34■□□□□ 0.69
Chmp1b2Q9CQD4 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Chmp1b2Q9CQD4 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Chmp1b2Q9CQD4 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Chmp1b2Q9CQD4 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC19.34■□□□□ 0.69
Chmp1b2Q9CQD4 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Chmp1b2Q9CQD4 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC19.34■□□□□ 0.69
Chmp1b2Q9CQD4 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Chmp1b2Q9CQD4 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Chmp1b2Q9CQD4 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Chmp1b2Q9CQD4 AC117245.4-201ENSMUST00000217388 1646 ntBASIC19.33■□□□□ 0.69
Chmp1b2Q9CQD4 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Chmp1b2Q9CQD4 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Chmp1b2Q9CQD4 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Chmp1b2Q9CQD4 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19.33■□□□□ 0.68
Chmp1b2Q9CQD4 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Chmp1b2Q9CQD4 Gm13042-201ENSMUST00000119244 1955 ntBASIC19.33■□□□□ 0.68
Chmp1b2Q9CQD4 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC19.33■□□□□ 0.68
Chmp1b2Q9CQD4 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Chmp1b2Q9CQD4 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Chmp1b2Q9CQD4 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
Chmp1b2Q9CQD4 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Chmp1b2Q9CQD4 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Chmp1b2Q9CQD4 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Chmp1b2Q9CQD4 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp1b2Q9CQD4 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp1b2Q9CQD4 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp1b2Q9CQD4 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC19.31■□□□□ 0.68
Chmp1b2Q9CQD4 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp1b2Q9CQD4 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Chmp1b2Q9CQD4 Gm43566-201ENSMUST00000196851 808 ntBASIC19.31■□□□□ 0.68
Chmp1b2Q9CQD4 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp1b2Q9CQD4 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Chmp1b2Q9CQD4 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp1b2Q9CQD4 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Chmp1b2Q9CQD4 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Chmp1b2Q9CQD4 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Chmp1b2Q9CQD4 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC19.3■□□□□ 0.68
Chmp1b2Q9CQD4 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Chmp1b2Q9CQD4 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Chmp1b2Q9CQD4 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Chmp1b2Q9CQD4 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Chmp1b2Q9CQD4 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC19.29■□□□□ 0.68
Chmp1b2Q9CQD4 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Chmp1b2Q9CQD4 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Chmp1b2Q9CQD4 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
Chmp1b2Q9CQD4 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Chmp1b2Q9CQD4 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC19.28■□□□□ 0.68
Chmp1b2Q9CQD4 Gm22567-201ENSMUST00000175542 342 ntBASIC19.28■□□□□ 0.68
Chmp1b2Q9CQD4 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC19.28■□□□□ 0.68
Chmp1b2Q9CQD4 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Chmp1b2Q9CQD4 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Chmp1b2Q9CQD4 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Chmp1b2Q9CQD4 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Chmp1b2Q9CQD4 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
Chmp1b2Q9CQD4 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Chmp1b2Q9CQD4 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Chmp1b2Q9CQD4 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Chmp1b2Q9CQD4 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC19.27■□□□□ 0.68
Chmp1b2Q9CQD4 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Chmp1b2Q9CQD4 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Chmp1b2Q9CQD4 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Chmp1b2Q9CQD4 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Chmp1b2Q9CQD4 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Chmp1b2Q9CQD4 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Chmp1b2Q9CQD4 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Chmp1b2Q9CQD4 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Chmp1b2Q9CQD4 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Chmp1b2Q9CQD4 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Chmp1b2Q9CQD4 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Chmp1b2Q9CQD4 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Chmp1b2Q9CQD4 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Chmp1b2Q9CQD4 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Chmp1b2Q9CQD4 Dmtn-209ENSMUST00000228295 2572 ntBASIC19.26■□□□□ 0.67
Chmp1b2Q9CQD4 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Chmp1b2Q9CQD4 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Chmp1b2Q9CQD4 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Chmp1b2Q9CQD4 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Chmp1b2Q9CQD4 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Chmp1b2Q9CQD4 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Chmp1b2Q9CQD4 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Chmp1b2Q9CQD4 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Chmp1b2Q9CQD4 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Chmp1b2Q9CQD4 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Chmp1b2Q9CQD4 Gm5812-201ENSMUST00000061073 957 ntBASIC19.24■□□□□ 0.67
Chmp1b2Q9CQD4 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Chmp1b2Q9CQD4 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Chmp1b2Q9CQD4 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Chmp1b2Q9CQD4 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Chmp1b2Q9CQD4 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Chmp1b2Q9CQD4 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Chmp1b2Q9CQD4 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC19.23■□□□□ 0.67
Chmp1b2Q9CQD4 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms