Protein–RNA interactions for Protein: Q91Y21

Pcdha1, Protocadherin alpha 1, mousemouse

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha1Q91Y21 Gm7417-201ENSMUST00000192950 473 ntBASIC22.14■■□□□ 1.13
Pcdha1Q91Y21 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Pcdha1Q91Y21 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Pcdha1Q91Y21 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Pcdha1Q91Y21 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdha1Q91Y21 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdha1Q91Y21 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdha1Q91Y21 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC22.13■■□□□ 1.13
Pcdha1Q91Y21 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC22.13■■□□□ 1.13
Pcdha1Q91Y21 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdha1Q91Y21 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdha1Q91Y21 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdha1Q91Y21 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdha1Q91Y21 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdha1Q91Y21 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC22.12■■□□□ 1.13
Pcdha1Q91Y21 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC22.12■■□□□ 1.13
Pcdha1Q91Y21 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC22.12■■□□□ 1.13
Pcdha1Q91Y21 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdha1Q91Y21 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdha1Q91Y21 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
Pcdha1Q91Y21 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC22.12■■□□□ 1.13
Pcdha1Q91Y21 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdha1Q91Y21 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Pcdha1Q91Y21 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC22.11■■□□□ 1.13
Pcdha1Q91Y21 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Pcdha1Q91Y21 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Pcdha1Q91Y21 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Pcdha1Q91Y21 Gm8093-201ENSMUST00000128935 1892 ntBASIC22.1■■□□□ 1.13
Pcdha1Q91Y21 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC22.1■■□□□ 1.13
Pcdha1Q91Y21 Gm40881-201ENSMUST00000223397 166 ntBASIC22.1■■□□□ 1.13
Pcdha1Q91Y21 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Pcdha1Q91Y21 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Pcdha1Q91Y21 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC22.1■■□□□ 1.13
Pcdha1Q91Y21 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC22.1■■□□□ 1.13
Pcdha1Q91Y21 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Pcdha1Q91Y21 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC22.09■■□□□ 1.13
Pcdha1Q91Y21 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC22.09■■□□□ 1.13
Pcdha1Q91Y21 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Pcdha1Q91Y21 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Pcdha1Q91Y21 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Pcdha1Q91Y21 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC22.08■■□□□ 1.13
Pcdha1Q91Y21 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC22.08■■□□□ 1.13
Pcdha1Q91Y21 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Pcdha1Q91Y21 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Pcdha1Q91Y21 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.12
Pcdha1Q91Y21 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Pcdha1Q91Y21 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Pcdha1Q91Y21 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Pcdha1Q91Y21 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Pcdha1Q91Y21 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
Pcdha1Q91Y21 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC22.07■■□□□ 1.12
Pcdha1Q91Y21 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Pcdha1Q91Y21 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
Pcdha1Q91Y21 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
Pcdha1Q91Y21 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdha1Q91Y21 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
Pcdha1Q91Y21 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdha1Q91Y21 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdha1Q91Y21 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdha1Q91Y21 AC153962.1-201ENSMUST00000218530 1948 ntBASIC22.06■■□□□ 1.12
Pcdha1Q91Y21 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
Pcdha1Q91Y21 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdha1Q91Y21 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Pcdha1Q91Y21 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
Pcdha1Q91Y21 Gm10399-202ENSMUST00000202768 748 ntBASIC22.05■■□□□ 1.12
Pcdha1Q91Y21 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC22.05■■□□□ 1.12
Pcdha1Q91Y21 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdha1Q91Y21 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
Pcdha1Q91Y21 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdha1Q91Y21 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC22.04■■□□□ 1.12
Pcdha1Q91Y21 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdha1Q91Y21 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC22.04■■□□□ 1.12
Pcdha1Q91Y21 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
Pcdha1Q91Y21 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdha1Q91Y21 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdha1Q91Y21 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Pcdha1Q91Y21 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Pcdha1Q91Y21 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Pcdha1Q91Y21 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Pcdha1Q91Y21 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Pcdha1Q91Y21 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Pcdha1Q91Y21 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC22.03■■□□□ 1.12
Pcdha1Q91Y21 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC22.03■■□□□ 1.12
Pcdha1Q91Y21 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Pcdha1Q91Y21 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Pcdha1Q91Y21 Gm26766-202ENSMUST00000227544 2347 ntBASIC22.03■■□□□ 1.12
Pcdha1Q91Y21 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Pcdha1Q91Y21 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Pcdha1Q91Y21 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC22.02■■□□□ 1.12
Pcdha1Q91Y21 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
Pcdha1Q91Y21 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC22.02■■□□□ 1.12
Pcdha1Q91Y21 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC22.01■■□□□ 1.11
Pcdha1Q91Y21 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC22.01■■□□□ 1.11
Pcdha1Q91Y21 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC22.01■■□□□ 1.11
Pcdha1Q91Y21 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Pcdha1Q91Y21 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Pcdha1Q91Y21 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Pcdha1Q91Y21 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC22■■□□□ 1.11
Pcdha1Q91Y21 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Pcdha1Q91Y21 Gm15039-201ENSMUST00000118914 875 ntBASIC22■■□□□ 1.11
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms