Protein–RNA interactions for Protein: Q6T3U4

Npc1l1, Niemann-Pick C1-like protein 1, mousemouse

Predictions only

Length 1,333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Npc1l1Q6T3U4 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC25.61■■□□□ 1.69
Npc1l1Q6T3U4 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
Npc1l1Q6T3U4 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC25.61■■□□□ 1.69
Npc1l1Q6T3U4 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC25.61■■□□□ 1.69
Npc1l1Q6T3U4 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Npc1l1Q6T3U4 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Npc1l1Q6T3U4 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
Npc1l1Q6T3U4 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
Npc1l1Q6T3U4 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Npc1l1Q6T3U4 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC25.6■■□□□ 1.69
Npc1l1Q6T3U4 Gm40881-201ENSMUST00000223397 166 ntBASIC25.6■■□□□ 1.69
Npc1l1Q6T3U4 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Npc1l1Q6T3U4 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Npc1l1Q6T3U4 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
Npc1l1Q6T3U4 AC153962.1-201ENSMUST00000218530 1948 ntBASIC25.59■■□□□ 1.69
Npc1l1Q6T3U4 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
Npc1l1Q6T3U4 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Npc1l1Q6T3U4 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
Npc1l1Q6T3U4 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC25.59■■□□□ 1.69
Npc1l1Q6T3U4 Gm10399-202ENSMUST00000202768 748 ntBASIC25.59■■□□□ 1.69
Npc1l1Q6T3U4 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
Npc1l1Q6T3U4 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Npc1l1Q6T3U4 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Npc1l1Q6T3U4 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Npc1l1Q6T3U4 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Npc1l1Q6T3U4 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC25.58■■□□□ 1.69
Npc1l1Q6T3U4 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
Npc1l1Q6T3U4 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC25.58■■□□□ 1.68
Npc1l1Q6T3U4 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Npc1l1Q6T3U4 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
Npc1l1Q6T3U4 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC25.57■■□□□ 1.68
Npc1l1Q6T3U4 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC25.57■■□□□ 1.68
Npc1l1Q6T3U4 Gm8093-201ENSMUST00000128935 1892 ntBASIC25.57■■□□□ 1.68
Npc1l1Q6T3U4 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC25.56■■□□□ 1.68
Npc1l1Q6T3U4 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC25.56■■□□□ 1.68
Npc1l1Q6T3U4 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Npc1l1Q6T3U4 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
Npc1l1Q6T3U4 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Npc1l1Q6T3U4 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
Npc1l1Q6T3U4 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC25.55■■□□□ 1.68
Npc1l1Q6T3U4 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
Npc1l1Q6T3U4 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
Npc1l1Q6T3U4 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC25.55■■□□□ 1.68
Npc1l1Q6T3U4 Gm13241-201ENSMUST00000094493 780 ntBASIC25.55■■□□□ 1.68
Npc1l1Q6T3U4 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Npc1l1Q6T3U4 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Npc1l1Q6T3U4 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Npc1l1Q6T3U4 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Npc1l1Q6T3U4 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Npc1l1Q6T3U4 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
Npc1l1Q6T3U4 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC25.54■■□□□ 1.68
Npc1l1Q6T3U4 Gm22238-201ENSMUST00000175222 88 ntBASIC25.53■■□□□ 1.68
Npc1l1Q6T3U4 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC25.53■■□□□ 1.68
Npc1l1Q6T3U4 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
Npc1l1Q6T3U4 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
Npc1l1Q6T3U4 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
Npc1l1Q6T3U4 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC25.53■■□□□ 1.68
Npc1l1Q6T3U4 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Npc1l1Q6T3U4 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC25.52■■□□□ 1.68
Npc1l1Q6T3U4 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Npc1l1Q6T3U4 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
Npc1l1Q6T3U4 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Npc1l1Q6T3U4 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Npc1l1Q6T3U4 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC25.51■■□□□ 1.67
Npc1l1Q6T3U4 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Npc1l1Q6T3U4 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
Npc1l1Q6T3U4 Gm43034-201ENSMUST00000198678 1364 ntBASIC25.51■■□□□ 1.67
Npc1l1Q6T3U4 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Npc1l1Q6T3U4 Gm21956-201ENSMUST00000179946 522 ntBASIC25.51■■□□□ 1.67
Npc1l1Q6T3U4 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Npc1l1Q6T3U4 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC25.51■■□□□ 1.67
Npc1l1Q6T3U4 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC25.51■■□□□ 1.67
Npc1l1Q6T3U4 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Npc1l1Q6T3U4 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Npc1l1Q6T3U4 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC25.5■■□□□ 1.67
Npc1l1Q6T3U4 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Npc1l1Q6T3U4 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Npc1l1Q6T3U4 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC25.5■■□□□ 1.67
Npc1l1Q6T3U4 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC25.5■■□□□ 1.67
Npc1l1Q6T3U4 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC25.5■■□□□ 1.67
Npc1l1Q6T3U4 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC25.5■■□□□ 1.67
Npc1l1Q6T3U4 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Npc1l1Q6T3U4 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Npc1l1Q6T3U4 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Npc1l1Q6T3U4 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC25.5■■□□□ 1.67
Npc1l1Q6T3U4 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Npc1l1Q6T3U4 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
Npc1l1Q6T3U4 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC25.49■■□□□ 1.67
Npc1l1Q6T3U4 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
Npc1l1Q6T3U4 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
Npc1l1Q6T3U4 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Npc1l1Q6T3U4 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC25.48■■□□□ 1.67
Npc1l1Q6T3U4 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Npc1l1Q6T3U4 AC116713.1-201ENSMUST00000215074 430 ntBASIC25.48■■□□□ 1.67
Npc1l1Q6T3U4 Gm9847-201ENSMUST00000052528 599 ntBASIC25.48■■□□□ 1.67
Npc1l1Q6T3U4 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Npc1l1Q6T3U4 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
Npc1l1Q6T3U4 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Npc1l1Q6T3U4 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Npc1l1Q6T3U4 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms