Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Snrnp40Q6PE01 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
Snrnp40Q6PE01 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Snrnp40Q6PE01 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Snrnp40Q6PE01 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Snrnp40Q6PE01 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Snrnp40Q6PE01 Gm6934-201ENSMUST00000194780 1905 ntBASIC18.82■□□□□ 0.6
Snrnp40Q6PE01 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC18.82■□□□□ 0.6
Snrnp40Q6PE01 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC18.82■□□□□ 0.6
Snrnp40Q6PE01 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC18.82■□□□□ 0.6
Snrnp40Q6PE01 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC18.82■□□□□ 0.6
Snrnp40Q6PE01 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC18.82■□□□□ 0.6
Snrnp40Q6PE01 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Snrnp40Q6PE01 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC18.82■□□□□ 0.6
Snrnp40Q6PE01 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Snrnp40Q6PE01 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Snrnp40Q6PE01 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Snrnp40Q6PE01 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC18.81■□□□□ 0.6
Snrnp40Q6PE01 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC18.81■□□□□ 0.6
Snrnp40Q6PE01 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Snrnp40Q6PE01 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC18.81■□□□□ 0.6
Snrnp40Q6PE01 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
Snrnp40Q6PE01 Gm6139-201ENSMUST00000079261 882 ntBASIC18.81■□□□□ 0.6
Snrnp40Q6PE01 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Snrnp40Q6PE01 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Snrnp40Q6PE01 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Snrnp40Q6PE01 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Snrnp40Q6PE01 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Snrnp40Q6PE01 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC18.8■□□□□ 0.6
Snrnp40Q6PE01 Gm2011-201ENSMUST00000203124 1263 ntBASIC18.8■□□□□ 0.6
Snrnp40Q6PE01 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Snrnp40Q6PE01 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Snrnp40Q6PE01 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Snrnp40Q6PE01 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Snrnp40Q6PE01 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Snrnp40Q6PE01 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC18.79■□□□□ 0.6
Snrnp40Q6PE01 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Snrnp40Q6PE01 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Snrnp40Q6PE01 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Snrnp40Q6PE01 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC18.79■□□□□ 0.6
Snrnp40Q6PE01 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Snrnp40Q6PE01 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
Snrnp40Q6PE01 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Snrnp40Q6PE01 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Snrnp40Q6PE01 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Snrnp40Q6PE01 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Snrnp40Q6PE01 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC18.78■□□□□ 0.6
Snrnp40Q6PE01 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Snrnp40Q6PE01 Gm9870-201ENSMUST00000063874 645 ntBASIC18.78■□□□□ 0.6
Snrnp40Q6PE01 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
Snrnp40Q6PE01 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Snrnp40Q6PE01 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Snrnp40Q6PE01 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Snrnp40Q6PE01 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Snrnp40Q6PE01 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Snrnp40Q6PE01 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Snrnp40Q6PE01 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Snrnp40Q6PE01 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
Snrnp40Q6PE01 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Snrnp40Q6PE01 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC18.77■□□□□ 0.6
Snrnp40Q6PE01 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Snrnp40Q6PE01 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Snrnp40Q6PE01 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Snrnp40Q6PE01 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Snrnp40Q6PE01 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Snrnp40Q6PE01 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Snrnp40Q6PE01 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Snrnp40Q6PE01 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Snrnp40Q6PE01 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Snrnp40Q6PE01 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
Snrnp40Q6PE01 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC18.76■□□□□ 0.59
Snrnp40Q6PE01 Gm43137-201ENSMUST00000198052 594 ntBASIC18.76■□□□□ 0.59
Snrnp40Q6PE01 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Snrnp40Q6PE01 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Snrnp40Q6PE01 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Snrnp40Q6PE01 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Snrnp40Q6PE01 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC18.75■□□□□ 0.59
Snrnp40Q6PE01 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Snrnp40Q6PE01 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Snrnp40Q6PE01 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Snrnp40Q6PE01 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Snrnp40Q6PE01 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Snrnp40Q6PE01 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Snrnp40Q6PE01 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Snrnp40Q6PE01 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Snrnp40Q6PE01 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Snrnp40Q6PE01 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Snrnp40Q6PE01 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC18.74■□□□□ 0.59
Snrnp40Q6PE01 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC18.74■□□□□ 0.59
Snrnp40Q6PE01 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC18.74■□□□□ 0.59
Snrnp40Q6PE01 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Snrnp40Q6PE01 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Snrnp40Q6PE01 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Snrnp40Q6PE01 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Snrnp40Q6PE01 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Snrnp40Q6PE01 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC18.73■□□□□ 0.59
Snrnp40Q6PE01 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Snrnp40Q6PE01 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Snrnp40Q6PE01 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Snrnp40Q6PE01 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms