Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
Ddb1Q3U1J4 Gm9870-201ENSMUST00000063874 645 ntBASIC27.51■■□□□ 1.99
Ddb1Q3U1J4 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
Ddb1Q3U1J4 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
Ddb1Q3U1J4 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
Ddb1Q3U1J4 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
Ddb1Q3U1J4 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC27.5■■□□□ 1.99
Ddb1Q3U1J4 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
Ddb1Q3U1J4 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
Ddb1Q3U1J4 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC27.5■■□□□ 1.99
Ddb1Q3U1J4 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
Ddb1Q3U1J4 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC27.5■■□□□ 1.99
Ddb1Q3U1J4 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Ddb1Q3U1J4 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC27.49■■□□□ 1.99
Ddb1Q3U1J4 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC27.48■■□□□ 1.99
Ddb1Q3U1J4 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Ddb1Q3U1J4 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Ddb1Q3U1J4 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Ddb1Q3U1J4 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC27.47■■□□□ 1.99
Ddb1Q3U1J4 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Ddb1Q3U1J4 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC27.47■■□□□ 1.99
Ddb1Q3U1J4 Gm5874-201ENSMUST00000096101 508 ntBASIC27.47■■□□□ 1.99
Ddb1Q3U1J4 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC27.46■■□□□ 1.99
Ddb1Q3U1J4 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC27.45■■□□□ 1.99
Ddb1Q3U1J4 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC27.45■■□□□ 1.98
Ddb1Q3U1J4 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC27.44■■□□□ 1.98
Ddb1Q3U1J4 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Ddb1Q3U1J4 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Ddb1Q3U1J4 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
Ddb1Q3U1J4 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Ddb1Q3U1J4 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Ddb1Q3U1J4 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Ddb1Q3U1J4 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
Ddb1Q3U1J4 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC27.43■■□□□ 1.98
Ddb1Q3U1J4 AC116713.1-201ENSMUST00000215074 430 ntBASIC27.43■■□□□ 1.98
Ddb1Q3U1J4 Spcs1-207ENSMUST00000228767 1008 ntBASIC27.43■■□□□ 1.98
Ddb1Q3U1J4 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC27.42■■□□□ 1.98
Ddb1Q3U1J4 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
Ddb1Q3U1J4 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
Ddb1Q3U1J4 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
Ddb1Q3U1J4 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC27.42■■□□□ 1.98
Ddb1Q3U1J4 Gm42699-201ENSMUST00000198104 1657 ntBASIC27.42■■□□□ 1.98
Ddb1Q3U1J4 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
Ddb1Q3U1J4 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Ddb1Q3U1J4 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC27.41■■□□□ 1.98
Ddb1Q3U1J4 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC27.41■■□□□ 1.98
Ddb1Q3U1J4 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
Ddb1Q3U1J4 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC27.41■■□□□ 1.98
Ddb1Q3U1J4 Gm8493-201ENSMUST00000196881 489 ntBASIC27.41■■□□□ 1.98
Ddb1Q3U1J4 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC27.41■■□□□ 1.98
Ddb1Q3U1J4 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Ddb1Q3U1J4 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
Ddb1Q3U1J4 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC27.4■■□□□ 1.98
Ddb1Q3U1J4 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC27.4■■□□□ 1.98
Ddb1Q3U1J4 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC27.39■■□□□ 1.98
Ddb1Q3U1J4 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC27.39■■□□□ 1.97
Ddb1Q3U1J4 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
Ddb1Q3U1J4 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
Ddb1Q3U1J4 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
Ddb1Q3U1J4 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
Ddb1Q3U1J4 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
Ddb1Q3U1J4 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC27.37■■□□□ 1.97
Ddb1Q3U1J4 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC27.37■■□□□ 1.97
Ddb1Q3U1J4 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC27.37■■□□□ 1.97
Ddb1Q3U1J4 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC27.37■■□□□ 1.97
Ddb1Q3U1J4 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC27.37■■□□□ 1.97
Ddb1Q3U1J4 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
Ddb1Q3U1J4 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC27.36■■□□□ 1.97
Ddb1Q3U1J4 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Ddb1Q3U1J4 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
Ddb1Q3U1J4 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
Ddb1Q3U1J4 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC27.36■■□□□ 1.97
Ddb1Q3U1J4 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
Ddb1Q3U1J4 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC27.35■■□□□ 1.97
Ddb1Q3U1J4 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC27.35■■□□□ 1.97
Ddb1Q3U1J4 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC27.35■■□□□ 1.97
Ddb1Q3U1J4 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC27.34■■□□□ 1.97
Ddb1Q3U1J4 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Ddb1Q3U1J4 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC27.34■■□□□ 1.97
Ddb1Q3U1J4 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
Ddb1Q3U1J4 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
Ddb1Q3U1J4 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Ddb1Q3U1J4 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Ddb1Q3U1J4 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Ddb1Q3U1J4 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC27.33■■□□□ 1.97
Ddb1Q3U1J4 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Ddb1Q3U1J4 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Ddb1Q3U1J4 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Ddb1Q3U1J4 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC27.33■■□□□ 1.96
Ddb1Q3U1J4 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC27.33■■□□□ 1.96
Ddb1Q3U1J4 Krt8-ps-201ENSMUST00000208495 945 ntBASIC27.32■■□□□ 1.96
Ddb1Q3U1J4 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC27.32■■□□□ 1.96
Ddb1Q3U1J4 Wdr70-203ENSMUST00000227371 1130 ntBASIC27.32■■□□□ 1.96
Ddb1Q3U1J4 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Ddb1Q3U1J4 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Ddb1Q3U1J4 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC27.32■■□□□ 1.96
Ddb1Q3U1J4 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Ddb1Q3U1J4 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
Ddb1Q3U1J4 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Ddb1Q3U1J4 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Retrieved 100 of 76,532 protein–RNA pairs in 15.9 ms