Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Hmgb1P63158 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Hmgb1P63158 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
Hmgb1P63158 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Hmgb1P63158 Gm12504-201ENSMUST00000120860 2231 ntBASIC23.24■■□□□ 1.31
Hmgb1P63158 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Hmgb1P63158 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Hmgb1P63158 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Hmgb1P63158 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC23.23■■□□□ 1.31
Hmgb1P63158 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
Hmgb1P63158 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Hmgb1P63158 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Hmgb1P63158 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
Hmgb1P63158 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Hmgb1P63158 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Hmgb1P63158 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC23.22■■□□□ 1.31
Hmgb1P63158 Gm43592-201ENSMUST00000196922 1165 ntBASIC23.22■■□□□ 1.31
Hmgb1P63158 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Hmgb1P63158 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC23.22■■□□□ 1.31
Hmgb1P63158 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Hmgb1P63158 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Hmgb1P63158 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Hmgb1P63158 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Hmgb1P63158 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Hmgb1P63158 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Hmgb1P63158 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC23.21■■□□□ 1.31
Hmgb1P63158 Mir6538-201ENSMUST00000183713 110 ntBASIC23.21■■□□□ 1.31
Hmgb1P63158 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC23.21■■□□□ 1.31
Hmgb1P63158 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Hmgb1P63158 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Hmgb1P63158 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Hmgb1P63158 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
Hmgb1P63158 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Hmgb1P63158 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Hmgb1P63158 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Hmgb1P63158 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Hmgb1P63158 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
Hmgb1P63158 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Hmgb1P63158 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Hmgb1P63158 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Hmgb1P63158 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Hmgb1P63158 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
Hmgb1P63158 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
Hmgb1P63158 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
Hmgb1P63158 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Hmgb1P63158 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Hmgb1P63158 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC23.19■■□□□ 1.3
Hmgb1P63158 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Hmgb1P63158 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Hmgb1P63158 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC23.18■■□□□ 1.3
Hmgb1P63158 Gm12366-201ENSMUST00000121722 873 ntBASIC23.18■■□□□ 1.3
Hmgb1P63158 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC23.18■■□□□ 1.3
Hmgb1P63158 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC23.18■■□□□ 1.3
Hmgb1P63158 Gm5786-201ENSMUST00000085368 882 ntBASIC23.18■■□□□ 1.3
Hmgb1P63158 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Hmgb1P63158 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
Hmgb1P63158 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Hmgb1P63158 Gm43403-201ENSMUST00000198011 1786 ntBASIC23.17■■□□□ 1.3
Hmgb1P63158 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
Hmgb1P63158 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Hmgb1P63158 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Hmgb1P63158 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Hmgb1P63158 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
Hmgb1P63158 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Hmgb1P63158 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Hmgb1P63158 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Hmgb1P63158 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Hmgb1P63158 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC23.15■■□□□ 1.3
Hmgb1P63158 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC23.15■■□□□ 1.3
Hmgb1P63158 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Hmgb1P63158 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Hmgb1P63158 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC23.15■■□□□ 1.3
Hmgb1P63158 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC23.15■■□□□ 1.3
Hmgb1P63158 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
Hmgb1P63158 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.3
Hmgb1P63158 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
Hmgb1P63158 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Hmgb1P63158 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Hmgb1P63158 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Hmgb1P63158 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Hmgb1P63158 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Hmgb1P63158 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Hmgb1P63158 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
Hmgb1P63158 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Hmgb1P63158 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
Hmgb1P63158 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Hmgb1P63158 Gm10420-201ENSMUST00000121713 882 ntBASIC23.12■■□□□ 1.29
Hmgb1P63158 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC23.12■■□□□ 1.29
Hmgb1P63158 Gm38160-201ENSMUST00000193090 2499 ntBASIC23.12■■□□□ 1.29
Hmgb1P63158 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Hmgb1P63158 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Hmgb1P63158 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Hmgb1P63158 AC164883.3-201ENSMUST00000227396 1774 ntBASIC23.12■■□□□ 1.29
Hmgb1P63158 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
Hmgb1P63158 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Hmgb1P63158 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Hmgb1P63158 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
Hmgb1P63158 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Hmgb1P63158 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Hmgb1P63158 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 13.9 ms