Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Gm16464-201ENSMUST00000117815 1095 ntBASIC20.15■□□□□ 0.82
Sox3P53784 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sox3P53784 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Sox3P53784 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sox3P53784 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC20.14■□□□□ 0.82
Sox3P53784 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Sox3P53784 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Sox3P53784 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sox3P53784 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
Sox3P53784 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Sox3P53784 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sox3P53784 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Sox3P53784 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sox3P53784 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sox3P53784 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sox3P53784 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sox3P53784 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Sox3P53784 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Sox3P53784 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Sox3P53784 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sox3P53784 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sox3P53784 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sox3P53784 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sox3P53784 Gm12821-201ENSMUST00000120022 600 ntBASIC20.11■□□□□ 0.81
Sox3P53784 Gm12922-201ENSMUST00000120626 809 ntBASIC20.11■□□□□ 0.81
Sox3P53784 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sox3P53784 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Sox3P53784 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sox3P53784 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.11■□□□□ 0.81
Sox3P53784 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sox3P53784 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sox3P53784 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sox3P53784 Flvcr1-202ENSMUST00000191946 1216 ntBASIC20.1■□□□□ 0.81
Sox3P53784 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC20.1■□□□□ 0.81
Sox3P53784 Gm4419-202ENSMUST00000226239 1431 ntBASIC20.1■□□□□ 0.81
Sox3P53784 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sox3P53784 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Sox3P53784 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Sox3P53784 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Sox3P53784 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Sox3P53784 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Sox3P53784 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Sox3P53784 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC20.09■□□□□ 0.81
Sox3P53784 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sox3P53784 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Sox3P53784 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sox3P53784 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sox3P53784 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC20.08■□□□□ 0.81
Sox3P53784 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sox3P53784 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Sox3P53784 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Sox3P53784 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC20.08■□□□□ 0.8
Sox3P53784 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sox3P53784 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sox3P53784 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Sox3P53784 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Sox3P53784 AC140930.3-201ENSMUST00000222935 274 ntBASIC20.07■□□□□ 0.8
Sox3P53784 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sox3P53784 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Sox3P53784 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC20.06■□□□□ 0.8
Sox3P53784 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Sox3P53784 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC20.06■□□□□ 0.8
Sox3P53784 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC20.06■□□□□ 0.8
Sox3P53784 Gm27454-201ENSMUST00000185090 204 ntBASIC20.06■□□□□ 0.8
Sox3P53784 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Sox3P53784 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC20.06■□□□□ 0.8
Sox3P53784 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sox3P53784 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sox3P53784 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC20.06■□□□□ 0.8
Sox3P53784 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sox3P53784 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC20.05■□□□□ 0.8
Sox3P53784 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sox3P53784 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Sox3P53784 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Sox3P53784 Gm8495-201ENSMUST00000188740 694 ntBASIC20.05■□□□□ 0.8
Sox3P53784 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC20.05■□□□□ 0.8
Sox3P53784 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sox3P53784 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Sox3P53784 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Sox3P53784 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Sox3P53784 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Sox3P53784 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Sox3P53784 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sox3P53784 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC20.04■□□□□ 0.8
Sox3P53784 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC20.04■□□□□ 0.8
Sox3P53784 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sox3P53784 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sox3P53784 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Sox3P53784 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sox3P53784 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sox3P53784 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Sox3P53784 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sox3P53784 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC20.02■□□□□ 0.8
Sox3P53784 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC20.02■□□□□ 0.8
Sox3P53784 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sox3P53784 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sox3P53784 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sox3P53784 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sox3P53784 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Sox3P53784 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms