Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Shmt1P50431 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
Shmt1P50431 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC22.52■■□□□ 1.2
Shmt1P50431 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Shmt1P50431 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Shmt1P50431 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Shmt1P50431 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Shmt1P50431 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Shmt1P50431 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC22.51■■□□□ 1.19
Shmt1P50431 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC22.51■■□□□ 1.19
Shmt1P50431 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC22.51■■□□□ 1.19
Shmt1P50431 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
Shmt1P50431 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC22.5■■□□□ 1.19
Shmt1P50431 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Shmt1P50431 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
Shmt1P50431 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
Shmt1P50431 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Shmt1P50431 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Shmt1P50431 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Shmt1P50431 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Shmt1P50431 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Shmt1P50431 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Shmt1P50431 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Shmt1P50431 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
Shmt1P50431 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Shmt1P50431 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC22.48■■□□□ 1.19
Shmt1P50431 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
Shmt1P50431 Gm5131-201ENSMUST00000212776 1238 ntBASIC22.48■■□□□ 1.19
Shmt1P50431 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Shmt1P50431 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
Shmt1P50431 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Shmt1P50431 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Shmt1P50431 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Shmt1P50431 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Shmt1P50431 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Shmt1P50431 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Shmt1P50431 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Shmt1P50431 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Shmt1P50431 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Shmt1P50431 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC22.46■■□□□ 1.19
Shmt1P50431 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Shmt1P50431 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Shmt1P50431 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC22.45■■□□□ 1.19
Shmt1P50431 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC22.45■■□□□ 1.18
Shmt1P50431 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Shmt1P50431 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC22.45■■□□□ 1.18
Shmt1P50431 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC22.45■■□□□ 1.18
Shmt1P50431 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC22.45■■□□□ 1.18
Shmt1P50431 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Shmt1P50431 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
Shmt1P50431 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC22.44■■□□□ 1.18
Shmt1P50431 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
Shmt1P50431 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
Shmt1P50431 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC22.44■■□□□ 1.18
Shmt1P50431 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
Shmt1P50431 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Shmt1P50431 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Shmt1P50431 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Shmt1P50431 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Shmt1P50431 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC22.43■■□□□ 1.18
Shmt1P50431 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Shmt1P50431 Etf1-202ENSMUST00000180351 108 ntBASIC22.43■■□□□ 1.18
Shmt1P50431 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Shmt1P50431 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC22.42■■□□□ 1.18
Shmt1P50431 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Shmt1P50431 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Shmt1P50431 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Shmt1P50431 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Shmt1P50431 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC22.41■■□□□ 1.18
Shmt1P50431 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC22.41■■□□□ 1.18
Shmt1P50431 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Shmt1P50431 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
Shmt1P50431 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC22.4■■□□□ 1.18
Shmt1P50431 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Shmt1P50431 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
Shmt1P50431 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC22.4■■□□□ 1.18
Shmt1P50431 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC22.4■■□□□ 1.18
Shmt1P50431 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Shmt1P50431 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC22.39■■□□□ 1.18
Shmt1P50431 Gm10620-201ENSMUST00000098379 1332 ntBASIC22.39■■□□□ 1.18
Shmt1P50431 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Shmt1P50431 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
Shmt1P50431 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Shmt1P50431 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.17
Shmt1P50431 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
Shmt1P50431 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Shmt1P50431 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Shmt1P50431 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Shmt1P50431 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Shmt1P50431 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Shmt1P50431 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Shmt1P50431 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Shmt1P50431 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Shmt1P50431 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Shmt1P50431 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Shmt1P50431 Gm15039-201ENSMUST00000118914 875 ntBASIC22.37■■□□□ 1.17
Shmt1P50431 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC22.37■■□□□ 1.17
Shmt1P50431 Gm10399-202ENSMUST00000202768 748 ntBASIC22.37■■□□□ 1.17
Shmt1P50431 Gm40881-201ENSMUST00000223397 166 ntBASIC22.37■■□□□ 1.17
Shmt1P50431 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Retrieved 100 of 76,532 protein–RNA pairs in 60.6 ms