Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC22,46■■□□□ 1,19
Hmgb3O54879 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC22,45■■□□□ 1,18
Hmgb3O54879 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC22,44■■□□□ 1,18
Hmgb3O54879 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC22,42■■□□□ 1,18
Hmgb3O54879 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC22,4■■□□□ 1,18
Hmgb3O54879 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC22,39■■□□□ 1,18
Hmgb3O54879 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC22,38■■□□□ 1,17
Hmgb3O54879 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC22,38■■□□□ 1,17
Hmgb3O54879 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC22,38■■□□□ 1,17
Hmgb3O54879 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC22,37■■□□□ 1,17
Hmgb3O54879 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC22,37■■□□□ 1,17
Hmgb3O54879 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC22,31■■□□□ 1,16
Hmgb3O54879 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC22,31■■□□□ 1,16
Hmgb3O54879 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC22,3■■□□□ 1,16
Hmgb3O54879 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC22,28■■□□□ 1,16
Hmgb3O54879 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC22,26■■□□□ 1,15
Hmgb3O54879 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC22,24■■□□□ 1,15
Hmgb3O54879 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC22,23■■□□□ 1,15
Hmgb3O54879 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC22,22■■□□□ 1,15
Hmgb3O54879 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC22,22■■□□□ 1,15
Hmgb3O54879 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC22,2■■□□□ 1,14
Hmgb3O54879 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC22,19■■□□□ 1,14
Hmgb3O54879 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC22,19■■□□□ 1,14
Hmgb3O54879 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC22,16■■□□□ 1,14
Hmgb3O54879 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC22,15■■□□□ 1,14
Hmgb3O54879 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC22,15■■□□□ 1,14
Hmgb3O54879 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC22,13■■□□□ 1,13
Hmgb3O54879 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC22,13■■□□□ 1,13
Hmgb3O54879 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC22,1■■□□□ 1,13
Hmgb3O54879 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC22,08■■□□□ 1,12
Hmgb3O54879 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC22,07■■□□□ 1,12
Hmgb3O54879 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC22,07■■□□□ 1,12
Hmgb3O54879 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC22,03■■□□□ 1,12
Hmgb3O54879 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC22,02■■□□□ 1,12
Hmgb3O54879 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1,11
Hmgb3O54879 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC21,98■■□□□ 1,11
Hmgb3O54879 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC21,97■■□□□ 1,11
Hmgb3O54879 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21,97■■□□□ 1,11
Hmgb3O54879 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC21,92■■□□□ 1,1
Hmgb3O54879 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC21,91■■□□□ 1,1
Hmgb3O54879 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC21,87■■□□□ 1,09
Hmgb3O54879 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21,84■■□□□ 1,09
Hmgb3O54879 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC21,84■■□□□ 1,09
Hmgb3O54879 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC21,83■■□□□ 1,09
Hmgb3O54879 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC21,83■■□□□ 1,09
Hmgb3O54879 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC21,83■■□□□ 1,08
Hmgb3O54879 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC21,82■■□□□ 1,08
Hmgb3O54879 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC21,81■■□□□ 1,08
Hmgb3O54879 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC21,8■■□□□ 1,08
Hmgb3O54879 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC21,79■■□□□ 1,08
Hmgb3O54879 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC21,78■■□□□ 1,08
Hmgb3O54879 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC21,77■■□□□ 1,08
Hmgb3O54879 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC21,76■■□□□ 1,07
Hmgb3O54879 AC153504.1-201ENSMUST00000218379 2290 ntBASIC21,76■■□□□ 1,07
Hmgb3O54879 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC21,75■■□□□ 1,07
Hmgb3O54879 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC21,75■■□□□ 1,07
Hmgb3O54879 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC21,74■■□□□ 1,07
Hmgb3O54879 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC21,71■■□□□ 1,07
Hmgb3O54879 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC21,71■■□□□ 1,07
Hmgb3O54879 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC21,69■■□□□ 1,06
Hmgb3O54879 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC21,66■■□□□ 1,06
Hmgb3O54879 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC21,66■■□□□ 1,06
Hmgb3O54879 Gm2415-204ENSMUST00000190235 2004 ntBASIC21,65■■□□□ 1,06
Hmgb3O54879 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC21,61■■□□□ 1,05
Hmgb3O54879 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC21,61■■□□□ 1,05
Hmgb3O54879 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC21,6■■□□□ 1,05
Hmgb3O54879 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC21,59■■□□□ 1,05
Hmgb3O54879 Gm27325-201ENSMUST00000175467 74 ntBASIC21,57■■□□□ 1,04
Hmgb3O54879 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC21,56■■□□□ 1,04
Hmgb3O54879 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC21,55■■□□□ 1,04
Hmgb3O54879 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC21,55■■□□□ 1,04
Hmgb3O54879 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC21,54■■□□□ 1,04
Hmgb3O54879 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC21,53■■□□□ 1,04
Hmgb3O54879 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC21,52■■□□□ 1,04
Hmgb3O54879 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC21,52■■□□□ 1,04
Hmgb3O54879 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC21,52■■□□□ 1,04
Hmgb3O54879 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC21,52■■□□□ 1,03
Hmgb3O54879 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC21,51■■□□□ 1,03
Hmgb3O54879 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC21,5■■□□□ 1,03
Hmgb3O54879 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC21,5■■□□□ 1,03
Hmgb3O54879 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC21,5■■□□□ 1,03
Hmgb3O54879 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC21,49■■□□□ 1,03
Hmgb3O54879 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC21,49■■□□□ 1,03
Hmgb3O54879 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC21,49■■□□□ 1,03
Hmgb3O54879 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC21,49■■□□□ 1,03
Hmgb3O54879 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21,48■■□□□ 1,03
Hmgb3O54879 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC21,47■■□□□ 1,03
Hmgb3O54879 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC21,47■■□□□ 1,03
Hmgb3O54879 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC21,46■■□□□ 1,03
Hmgb3O54879 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC21,46■■□□□ 1,03
Hmgb3O54879 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC21,44■■□□□ 1,02
Hmgb3O54879 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC21,44■■□□□ 1,02
Hmgb3O54879 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC21,44■■□□□ 1,02
Hmgb3O54879 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC21,44■■□□□ 1,02
Hmgb3O54879 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC21,43■■□□□ 1,02
Hmgb3O54879 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC21,43■■□□□ 1,02
Hmgb3O54879 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC21,41■■□□□ 1,02
Hmgb3O54879 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC21,41■■□□□ 1,02
Hmgb3O54879 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21,41■■□□□ 1,02
Hmgb3O54879 Gm6658-202ENSMUST00000209493 1885 ntBASIC21,41■■□□□ 1,02
Retrieved 100 of 76,532 protein–RNA pairs in 10,7 ms