Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Gm24644-201ENSMUST00000157114 139 ntBASIC14.5□□□□□ -0.09
Smc1aQ9CU62 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 AC159196.2-201ENSMUST00000224082 1622 ntBASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Gm13730-201ENSMUST00000121036 1462 ntBASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Mir1247-201ENSMUST00000116706 82 ntBASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 AC126253.1-201ENSMUST00000227974 824 ntBASIC14.49□□□□□ -0.09
Smc1aQ9CU62 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 AC161252.3-201ENSMUST00000225465 1549 ntBASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Smc1aQ9CU62 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Gm15198-201ENSMUST00000117283 177 ntBASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Gm12384-201ENSMUST00000119228 919 ntBASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Gm40466-201ENSMUST00000212174 422 ntBASIC14.48□□□□□ -0.09
Smc1aQ9CU62 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Smc1aQ9CU62 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms