Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.08
Ushbp1Q8R370 Ntrk2-208ENSMUST00000225583 2719 ntBASIC14.52□□□□□ -0.08
Ushbp1Q8R370 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ushbp1Q8R370 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ushbp1Q8R370 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ushbp1Q8R370 AC154747.3-201ENSMUST00000224471 3470 ntBASIC14.52□□□□□ -0.08
Ushbp1Q8R370 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ushbp1Q8R370 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC14.52□□□□□ -0.08
Ushbp1Q8R370 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ushbp1Q8R370 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ushbp1Q8R370 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Ushbp1Q8R370 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ushbp1Q8R370 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ushbp1Q8R370 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ushbp1Q8R370 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Ushbp1Q8R370 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC14.52□□□□□ -0.09
Ushbp1Q8R370 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Ushbp1Q8R370 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC14.52□□□□□ -0.09
Ushbp1Q8R370 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Ushbp1Q8R370 Gm6152-201ENSMUST00000151704 340 ntBASIC14.52□□□□□ -0.09
Ushbp1Q8R370 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ushbp1Q8R370 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
Ushbp1Q8R370 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Ushbp1Q8R370 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC14.52□□□□□ -0.09
Ushbp1Q8R370 Gm29705-201ENSMUST00000212598 474 ntBASIC14.52□□□□□ -0.09
Ushbp1Q8R370 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ushbp1Q8R370 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ushbp1Q8R370 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ushbp1Q8R370 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ushbp1Q8R370 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Ushbp1Q8R370 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
Ushbp1Q8R370 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Ushbp1Q8R370 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Proscos-202ENSMUST00000178990 666 ntBASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Gm44069-201ENSMUST00000204898 506 ntBASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Gm44064-201ENSMUST00000204964 1087 ntBASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Gm24526-201ENSMUST00000082921 158 ntBASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ushbp1Q8R370 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Gm10339-203ENSMUST00000225409 1671 ntBASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC14.5□□□□□ -0.09
Ushbp1Q8R370 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms