Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm8738-201ENSMUST00000172606 329 ntBASIC15.26■□□□□ 0.03
Trim56Q80VI1 Gm18584-201ENSMUST00000203098 964 ntBASIC15.26■□□□□ 0.03
Trim56Q80VI1 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Gm8228-201ENSMUST00000189949 2192 ntBASIC15.26■□□□□ 0.03
Trim56Q80VI1 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim56Q80VI1 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim56Q80VI1 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trim56Q80VI1 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Gm13813-201ENSMUST00000120998 787 ntBASIC15.25■□□□□ 0.03
Trim56Q80VI1 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Gm23363-201ENSMUST00000175024 79 ntBASIC15.25■□□□□ 0.03
Trim56Q80VI1 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim56Q80VI1 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC15.24■□□□□ 0.03
Trim56Q80VI1 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim56Q80VI1 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim56Q80VI1 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim56Q80VI1 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim56Q80VI1 Gm11793-201ENSMUST00000120433 981 ntBASIC15.24■□□□□ 0.03
Trim56Q80VI1 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC15.24■□□□□ 0.03
Trim56Q80VI1 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trim56Q80VI1 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC15.24■□□□□ 0.03
Trim56Q80VI1 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Trim56Q80VI1 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC15.24■□□□□ 0.03
Trim56Q80VI1 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trim56Q80VI1 Gm45930-201ENSMUST00000221330 292 ntBASIC15.24■□□□□ 0.03
Trim56Q80VI1 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC15.24■□□□□ 0.03
Trim56Q80VI1 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim56Q80VI1 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim56Q80VI1 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim56Q80VI1 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim56Q80VI1 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim56Q80VI1 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim56Q80VI1 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim56Q80VI1 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Trim56Q80VI1 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Gm12502-201ENSMUST00000120197 444 ntBASIC15.23■□□□□ 0.03
Trim56Q80VI1 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC15.23■□□□□ 0.03
Trim56Q80VI1 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim56Q80VI1 AC138604.1-201ENSMUST00000226969 739 ntBASIC15.23■□□□□ 0.03
Trim56Q80VI1 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Gm8399-201ENSMUST00000082300 1117 ntBASIC15.23■□□□□ 0.03
Trim56Q80VI1 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim56Q80VI1 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Gm6203-201ENSMUST00000209575 1342 ntBASIC15.22■□□□□ 0.03
Trim56Q80VI1 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms